Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq77 125 8e-24 >seq77 Length=18658056 Score = 125 bits (138), Expect = 8e-24 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 ||||||||||| | ||| | ||||||| ||| ||||||| | ||| || ||||| ||| Sbjct 17991221 CCTCCTTGATCAACATAACGAGCAGTATCATTAAAAACTCTCAGCATCGGAACAATTCCA 17991162 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| ||||||| || || ||| |||||||| | || | || ||| || || Sbjct 17991161 TTAGATGTACCATTCGTGCCACGAATGTAACTTCCCATTGCACGAATGTTATGAACCGAT 17991102 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | || || ||||| || |||| ||| | ||||||| ||| | || |||||||| Sbjct 17991101 ACGCCAATTCCACCAGCTGATTTACTTATAACAGCACACTCTTTCAACGTCTCATAAATC 17991042 Query 48540 CCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTA 48581 ||||| |||||||||||| ||||| | | |||||| ||| Sbjct 17991041 CCTTCAATACTATCATCTTTCATACAAATCAAAAAACAGCTA 17991000 Score = 116 bits (128), Expect = 4e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 ||||||||||| || | || ||||| |||||| | |||||| | | || | || | Sbjct 17990896 GTTCCTGAATTGAAGAGAGTAGGAGACGCATGAGTGAACCATCTTTGAGACATTAAATGG 17990837 Query 48660 TATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAAC 48719 ||||||| || | ||||| | ||| || || ||||| | ||| || | ||||| | Sbjct 17990836 TATGTTTTGATTGCGGAATCAACATCTTCTTTGTGAATACCAACAGAGACTCTCATTAGC 17990777 Query 48720 ATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAAT 48779 || | |||||| |||||||||| |||| | | |||||| || ||||||||||| | | Sbjct 17990776 ATGTGTTGAGGCCTTTCAACAACTTTGCCTTGAACTTTCAAGAGGTATGATTTTTCAAGT 17990717 Query 48780 GTTTTAAAACCAAAATA 48796 ||||| |||||||| || Sbjct 17990716 GTTTTGAAACCAAAGTA 17990700 Score = 86.0 bits (94), Expect = 7e-12 Identities = 120/166 (72%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 48104 TTCGTATTTAGTATATAACTTCTCAAATTCATC-CCCATACACATTATCTAACCCAGGAC 48162 ||||||| | | || || |||||||||| || ||| ||| || | ||| || ||| Sbjct 17991637 TTCGTATCGAATGTACAATCTCTCAAATTCTTCACCCCAACA-ATCACTTAAACCTGGAG 17991579 Query 48163 ATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATAT 48222 |||||||||||| | ||||||||| | ||||| ||| ||||| ||| || | || Sbjct 17991578 CTTCATTAGGACAAAACAATGACCATTTTCCATCACTTTGAACTCTCTCCATGAACAAAT 17991519 Query 48223 CTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTC 48268 | |||| ||||||| | ||| || || |||| ||| ||||||| Sbjct 17991518 CAGGTACCCAAAGACCATAAAACAAGTCTCTAGCTCTGTGTTCTTC 17991473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562107675782400