Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq153 506 6e-139 seq80 396 8e-106 seq90 111 5e-20 >seq153 Length=83015 Score = 506 bits (560), Expect = 6e-139 Identities = 702/983 (71%), Gaps = 0/983 (0%) Strand=Plus/Minus Query 25802 TTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTT 25861 || ||| | ||| | || || ||||| |||||||| || | |||||||| || || | Sbjct 52472 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 52413 Query 25862 ATGATACCCTGCTTACTCGCAGCCACTACATGTTTTATACTTGCCTTCATCGCAGCACCG 25921 ||||| || |||| | | || ||| | |||||| | || ||||| || || || Sbjct 52412 ATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCT 52353 Query 25922 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 25981 || |||||||| ||||| || ||||| || ||||| || || | | |||||||||||| Sbjct 52352 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 52293 Query 25982 ATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGATC 26041 || || || || || | | || | ||| ||| || || | || |||||||||||| Sbjct 52292 ATTATTTCTGGTGCCATTATTCCTACTTCTGCCGCTATTGGTTTGCACTTTTACCCGATC 52233 Query 26042 TGGGAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTATC 26101 |||||||||| | | || || ||||||||||| || || || ||| |||| ||| | Sbjct 52232 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGTT 52173 Query 26102 TTCCACTTCTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTACAGA 26161 | ||||| ||| | || ||||| ||| || | |||||||||| || | | Sbjct 52172 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 52113 Query 26162 CTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCGCA 26221 || || ||| | || ||||| |||||||||| |||| || | | || ||| || Sbjct 52112 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCT 52053 Query 26222 GTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATC 26281 || ||||| | || || | || ||||| |||||| |||||| |||||||| || ||| Sbjct 52052 GTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 51993 Query 26282 TCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCCA 26341 ||||||||||| ||||||||| | |||||||| || || || || || || ||||||||| Sbjct 51992 TCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCA 51933 Query 26342 TTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGGA 26401 || || ||| ||||| ||||| || ||||| || | || || ||||||||| || Sbjct 51932 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTTAGTGCTATGCATGGT 51873 Query 26402 AGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTATGGC 26461 ||||| ||||| | || ||||| ||||| | | || ||| | || Sbjct 51872 TCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGT 51813 Query 26462 TATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGG 26521 || | || || ||||| ||||| || || || ||||| ||||| ||||| || ||||| Sbjct 51812 TACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGC 51753 Query 26522 AGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCT 26581 |||| || || || ||||| ||||| || ||| ||||||| | |||||||| | || Sbjct 51752 CGATTGATCTTCCAATATGCTAGTTTCAACAACTCCCGTTCTTTACATTTCTTCTTAGCG 51693 Query 26582 ACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAAC 26641 |||||||||| || || || ||| | || || | ||||| |||| ||||| || ||| Sbjct 51692 GCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAAC 51633 Query 26642 CTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACCTACA 26701 ||||||||||| || || ||||| |||||||| ||| | | ||| | || ||| Sbjct 51632 CTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACT 51573 Query 26702 TGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCT 26761 ||||||||| | | ||||| |||||||| || | ||||||||||| || ||||||||| Sbjct 51572 TGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 51513 Query 26762 CATAACTTTCCACTTGACTTAGC 26784 || ||||| || || ||| |||| Sbjct 51512 CACAACTTCCCTCTAGACCTAGC 51490 >seq80 Length=21647715 Score = 396 bits (438), Expect = 8e-106 Identities = 666/960 (69%), Gaps = 4/960 (0%) Strand=Plus/Plus Query 25823 ACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTTATGATACCCTGCTTACTCGCA 25882 ||||| |||||||| || | |||||||| || || | |||| || |||| | Sbjct 17113468 ACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTAGTGATCCCTACCTTATTGAAC 17113527 Query 25883 GCCACTACATGTTTTATACTTGCCTTCATCGCAGCACCGCCTGTAGATATAGATGGCATA 25942 || ||| | |||||| | || ||||| | | || | |||||||| ||||| || Sbjct 17113528 GCAACTTCCGTTTTTATTATCGCATTCATTGTTGTTCCTCTAGTAGATATTGATGGTATT 17113587 Query 25943 CGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATAATATCAGGAGCAGTCGTC 26002 |||| || ||||| | || | | |||||||||||||| || || || | | | Sbjct 17113588 TGTGAACCTGTTTCTAGATCTCTTCTTTACGGAAACAATATTATTTCTGGTGTCATTATT 17113647 Query 26003 CCCTCCTCTAACGCAATCGGACTACATTTTTACCCGATCTGGGAAGCTGGCACACTGGAC 26062 || | | | ||| || || | || ||||||||||||| |||||||| | | || Sbjct 17113648 CCTACTTATGTCGCTATTGGTTTGCACTTTTACCCGATCTAGGAAGCTGCATCCGTTGAT 17113707 Query 26063 GAGTGGCTATACAATGGCGGACCATATCAACTCATTATCTTCCACTTCTTAATAGGAGTA 26122 || ||||||||||| || | | ||| |||| ||| | | ||||| ||| | || ||| Sbjct 17113708 GAATGGCTATACAACGGTTGTCTTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTA 17113767 Query 26123 GCAGCATATGCAGGGAGACAGTGGGAACTATCTTACAGACTAGGAATGAGACCATGGATA 26182 || ||| || | |||||||||| || | | || || || | || ||||| Sbjct 17113768 GCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCTGTCTGGGTGTGCGTCCTTGGATT 17113827 Query 26183 TTTGTTGCATATACAGCACCACTATCCGCAGCTCTCGCAGTGTTCTTAGTTTATCCTTTC 26242 |||||||||||| |||| ||| | | || ||| || || ||||| || || | Sbjct 17113828 TTTGTTGCATATTCAGCTCCAGTTGCAGCTGCTACTGCTGTTTTCTTGAACTACCCAATT 17113887 Query 26243 GGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATG 26302 | ||||| |||||| |||||| |||||||| | |||||||||||||| ||||||||| Sbjct 17113888 TGTCAAGGAAGTTTTTATGATGGTATGCCTCTATGAATCTCTGGTACTTTCAACTTTATG 17113947 Query 26303 TTCGTATTCCAAGCAGAACATAATATACTCATGCACCCATTCCATATGGCTGGTGTTGCT 26362 | |||||| | || || || || || || ||||||||||| || ||| ||||| ||| Sbjct 17113948 ATTGTATTCTAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCT 17114007 Query 26363 GGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGGAAGTTTGGTTACTTCCTCACTT 26422 || || ||||| || | || || ||||||||| || |||||| ||||| | Sbjct 17114008 GGTGTATTCGGCGGTTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACTTCTAGTTTG 17114067 Query 26423 ATTGCAGAAACGACAGAGGAAGTCTCACAGAATTATGGCTATAAGTTTGGGCAAGATGAA 26482 || ||||| ||||| | | || ||| | || || | || || ||||| ||| Sbjct 17114068 ATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAA 17114127 Query 26483 GAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTAATTTTTCAGTATGCG 26542 | || || || ||||| | ||| |||| || ||||| |||| || || || ||||| Sbjct 17114128 AAAACTTACAACATTGTAGTTGCTCACGACTATTTTGGCCGATTGATCTTCCAATATGCT 17114187 Query 26543 AGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCTACTTGGCCGGTTGTTGGCATA 26602 ||||| || ||| ||||||| | |||||||| | || |||||||||| || | || Sbjct 17114188 AGTTTCAACAACTCCCGTTCTTTACATTTCTTCTTAGCAGCTTGGCCGGTAGTAGCTATT 17114247 Query 26603 TGGCTGACATCTATGGGTATCTGCACAATGGCATTTAACCTAAATGGTTTTAACTTTAAC 26662 ||| | || || | ||||| |||| ||||| || |||||||||||||| | || ||| Sbjct 17114248 TGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAGTTTCAAC 17114307 Query 26663 CAGTCAGTAGTAGAT-GTTAATGGAAAG-ATAATACCTACATGGGCTGATGTATTAAACC 26720 | ||| |||| ||| || || ||| | | || ||| ||||||||| | | |||| Sbjct 17114308 CCATCAATAGTTGATAGTCAA--GAACGTGTTATTAATACTTGGGCTGATATTATTAACC 17114365 Query 26721 GAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCTCATAACTTTCCACTTGACT 26780 | ||||| || | | ||||||||||| || ||||||||||| ||||| || ||| ||| Sbjct 17114366 GTGCTAATCTTGTTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTTTACT 17114425 >seq90 Length=4948294 Score = 111 bits (122), Expect = 5e-20 Identities = 160/223 (72%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 26557 CCGTTCTCTTCATTTCTTTCTTGCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTAT 26616 ||||| | | |||||||| | || |||||||||| | || ||| | || || | Sbjct 3476972 CCGTTTTTTACATTTCTTCTTAGCGGCTTGGCCGGTAATACATATTTGGTTTACTGCTTT 3477031 Query 26617 GGGTATCTGCACAATGGCATTTAACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGA 26676 ||||| |||| | || || || |||||||||||||| || ||||| |||||||| || Sbjct 3477032 AGGTATTAGCACTGTAGCTTTCAATCTAAATGGTTTTAATTTCAACCAATCAGTAGTTGA 3477091 Query 26677 T-GTTAATGGAAAGATAATACCTACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCT 26735 | || |||| | || || ||| |||| |||| | | || || |||||||| || Sbjct 3477092 TAGTCAATGACGTGTTATTA-ATACTTGGGTTGATATTATTAATCGTGCTAACCTTGGTA 3477150 Query 26736 TTGAAGTTATGCACGAGCGTAATGCTCATAACTTTCCACTTGA 26778 | ||||||||||| | |||||||||| ||||| || || || Sbjct 3477151 TGGAAGTTATGCATTAAGGTAATGCTCAAAACTTCCCTCTAGA 3477193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146726121219840