Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq153 583 3e-162 seq80 452 1e-122 seq90 123 8e-24 >seq153 Length=83015 Score = 583 bits (646), Expect = 3e-162 Identities = 727/996 (73%), Gaps = 0/996 (0%) Strand=Plus/Plus Query 35960 AGACTCAGCAGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTC 36019 || |||| |||| |||||||| || ||||||||||| || ||||| |||||||||||||| Sbjct 51477 AGCCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 51536 Query 36020 CATGCCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGA 36079 ||| || | || |||||||||| ||| ||||||||||| | || | ||| | Sbjct 51537 CATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACT 51596 Query 36080 ATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCC 36139 |||||| ||||| || ||||| || || || || || || |||||||||||| | || Sbjct 51597 ATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACC 51656 Query 36140 CATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCG 36199 | ||| |||| ||| || | || |||||||| || | ||||||||||||| || Sbjct 51657 TAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACG 51716 Query 36200 GCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAAC 36259 | || || || |||||||| |||||||| | || ||||| || || ||||| || || Sbjct 51717 GGAGTTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTAC 51776 Query 36260 AATGTTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCC 36319 |||||| || || ||||||||||| |||||| | || || | || ||||||| | Sbjct 51777 AATGTTGTAAGTTTCTTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTC 51836 Query 36320 AGTTGTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGC 36379 || ||||| | || | ||||| || | || ||||||||| |||| | Sbjct 51837 TGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGA 51896 Query 36380 TCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTC 36439 || |||||||| || || ||||| | ||| || || || |||||||| || ||||| || Sbjct 51897 ACCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTC 51956 Query 36440 TGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGA 36499 ||||| || |||| |||||| |||||||| || || || || ||||||||||||||||| Sbjct 51957 AGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGA 52016 Query 36500 GAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGC 36559 ||||| ||||| |||| ||||||| ||||| |||||| || ||||||||||| || Sbjct 52017 AAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGC 52076 Query 36560 TGAATAAGCTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCG 36619 |||||| || ||| ||||| || | |||||| || | ||||||||||||| | || Sbjct 52077 TGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACG 52136 Query 36620 TCCCAAGTAAGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCC 36679 |||| ||| | | ||||| | |||||| | ||||| |||| ||| || || || Sbjct 52137 ACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCACC 52196 Query 36680 GTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGAT 36739 ||| |||| ||| || || | || ||||||||||||||| ||||| ||||| | ||| || Sbjct 52197 GTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGGTAAAAGTGCAAACCAAT 52256 Query 36740 TGCGTTCGATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCC 36799 ||| || | || | || || ||||| || || |||||||| || || | | ||| Sbjct 52257 AGCGGCAGAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCGTAAAGAAGAGATCC 52316 Query 36800 TGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAA 36859 || ||||| |||||||||||||| ||||| || ||||| ||||||| ||||| || | Sbjct 52317 AGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAAT 52376 Query 36860 AAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATA 36919 ||| | | ||| || || | | ||||||||| | || |||||||| || | || Sbjct 52377 AAAAACGGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTA 52436 Query 36920 GAGGCGGTTGTTTGTACTTGTAACCCAGTCACATAA 36955 || ||||| | || || || | ||||| ||| || Sbjct 52437 AAGACGGTTTTCAGTGCTGGTTATCCAGTTACAGAA 52472 >seq80 Length=21647715 Score = 452 bits (500), Expect = 1e-122 Identities = 673/952 (71%), Gaps = 2/952 (0%) Strand=Plus/Minus Query 35978 GTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCGGCACG 36037 || ||| ||||||||||| || ||||| ||||||||||||||||| | | | ||||| Sbjct 17114424 GTAAAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATAACAAGATTAGCACG 17114365 Query 36038 GTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGACTGATT 36097 ||||| ||| ||||||||||| | || | | | | |||||| | ||| | || Sbjct 17114364 GTTAATAATATCAGCCCAAGTATTAATAACACGTTCTTGACTATCAACTATTGATGGGTT 17114305 Query 36098 GAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGCCATAT 36157 ||| | || || || || || |||||||||||| | || | ||| |||| ||| || Sbjct 17114304 GAAACTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTAAACCAAAT 17114245 Query 36158 -GCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATTAAAGCTAG 36216 || | | || |||||||| || | ||||||||||||| ||| || || || |||| Sbjct 17114244 AGCTACT-ACCGGCCAAGCTGCTAAGAAGAAATGTAAAGAACGGGAGTTGTTGAAACTAG 17114186 Query 36217 CATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTT 36276 |||| |||||||| | || ||||| ||| | ||||| | |||||||| || || | || Sbjct 17114185 CATATTGGAAGATCAATCGGCCAAAATAGTCGTGAGCAACTACAATGTTGTAAGTTTTTT 17114126 Query 36277 CTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGAATAA 36336 ||||||| |||||| | || || | || ||||||| | || ||||| | || | Sbjct 17114125 CTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCA 17114066 Query 36337 GTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTG 36396 ||||| || | | || ||||||||| |||| | || |||||||| || | Sbjct 17114065 AACTAGAAGTTACCAAAGAACCATGCATAGCACTAAATAGGGAACCGCCGAATACACCAG 17114006 Query 36397 CAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACA 36456 | ||||| | ||| || || || |||||||| || ||||| || |||| || |||| || Sbjct 17114005 CTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTAGAATACAATCA 17113946 Query 36457 TAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAA 36516 |||| |||||||| || || || | ||||||||||||||| | ||||| ||||| | || Sbjct 17113945 TAAAGTTGAAAGTACCAGAGATTCATAGAGGCATACCATCATAAAAACTTCCTTGACAAA 17113886 Query 36517 AAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATA 36576 |||||| ||||| |||||| || |||||||| || |||||||| || ||| | | Sbjct 17113885 TTGGGTAGTTCAAGAAAACAGCAGTAGCAGCTGCAACTGGAGCTGAATATGCAACAAAAA 17113826 Query 36577 TCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGA 36636 |||| || | || ||| || | ||||||||||||| | || |||| ||| | | Sbjct 17113825 TCCAAGGACGCACACCCAGACAGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTA 17113766 Query 36637 TACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGT 36696 ||||| | |||||| | ||||| |||| ||| | | ||||| |||| ||| || | Sbjct 17113765 CACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAAGACAACCGTTGTATAGCCATTCAT 17113706 Query 36697 CGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGATGATGGGA 36756 | | || |||||||||| |||| ||||| ||||| | ||| || ||| | | || | Sbjct 17113705 CAACGGATGCAGCTTCCTAGATCGGGTAAAAGTGCAAACCAATAGCGACATAAGTAGGAA 17113646 Query 36757 CGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAA 36816 || | ||||| || || |||||||| || || | | || || ||||| |||| || Sbjct 17113645 TAATGACACCAGAAATAATATTGTTTCCGTAAAGAAGAGATCTAGAAACAGGTTCACAAA 17113586 Query 36817 TACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTG 36876 ||||||| ||||| || |||| || ||| ||||| || | ||| | | ||| Sbjct 17113585 TACCATCAATATCTACTAGAGGAACAACAATGAATGCGATAATAAAAACGGAAGTTGCGT 17113526 Query 36877 TTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTT 36928 | || | | |||||||| || || |||||||| || | || || ||||| Sbjct 17113525 TCAATAAGGTAGGGATCACTAAAACACCAAACCATCCAATGTAAAGACGGTT 17113474 >seq90 Length=4948294 Score = 123 bits (136), Expect = 8e-24 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 35968 CAGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTA 36027 |||| |||| || || |||||||| || || |||| | ||||||||||||||| || | Sbjct 3477204 CAGCATCTAGTTCTAGAGGGAAGTTTTGAGCATTACCTTAATGCATAACTTCCATACCAA 3477145 Query 36028 AGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGA 36087 || ||||| |||| ||| ||| ||||||| | || | || | |||||| | Sbjct 3477144 GGTTAGCACGATTAATAATATCAACCCAAGTATTAATAACACGTCATTGACTATCAACTA 3477085 Query 36088 CTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGG 36147 |||| || ||||| ||||| || || ||||| ||||| | |||| | || | ||| | Sbjct 3477084 CTGATTGGTTGAAATTAAAACCATTTAGATTGAAAGCTACAGTGCTAATACCTAAAGCAG 3477025 Query 36148 TAAGCC--ATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAA 36194 ||| || ||||| | | || |||||||| || | ||||||||||||| Sbjct 3477024 TAAACCAAATATGTA--TTACCGGCCAAGCCGCTAAGAAGAAATGTAAA 3476978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150454114136640