Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq153 571 2e-158 seq80 437 3e-118 >seq153 Length=83015 Score = 571 bits (632), Expect = 2e-158 Identities = 727/996 (73%), Gaps = 6/996 (1%) Strand=Plus/Plus Query 5185 CTCAGCAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCAT 5244 |||| |||| ||||| || || ||||||||||||||||| ||||| ||||| |||||||| Sbjct 51480 CTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCAT 51539 Query 5245 ACCAAGGTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTC 5304 ||||||||| |||||||| | | ||| |||||||| || | | || | || Sbjct 51540 ACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTATC 51599 Query 5305 AACGACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCAT 5364 ||| ||||| || ||||| || || || || || || |||||||||||| || || | Sbjct 51600 AACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAA 51659 Query 5365 AGAGGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCT 5424 || |||| ||| || | || || ||||||| || | ||||||||||||| |||| Sbjct 51660 AGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGGGA 51719 Query 5425 ATTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAAT 5484 ||||| || |||||||| |||||||| | || ||||| || || ||||| || ||||| Sbjct 51720 GTTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACAAT 51779 Query 5485 GTTATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGT 5544 ||| || |||||||| ||||| |||||| | || || | || ||| | | || Sbjct 51780 GTTGTAAGTTTCTTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGT 51839 Query 5545 TGTTTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCC 5604 ||||| | || | |||||| || | |||||||||||| || | | || Sbjct 51840 GGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAACC 51899 Query 5605 ACCGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGC 5664 |||||||| ||||| ||||| | |||||| || || |||||||| || ||||| || || Sbjct 51900 GCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGC 51959 Query 5665 CTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAA 5724 ||||||||| | ||||||||| |||||||||||||| || ||||||||||||||| || Sbjct 51960 CTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAA 52019 Query 5725 ACTTCCCTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTG 5783 |||||| || || | ||||| | || || || | |||| || || ||||| || |||| Sbjct 52020 ACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTA-GCAGCTGCAACAGGAGCTG 52078 Query 5784 AATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTC 5843 ||||||| || |||||| || ||||| || | | | ||||||||||||| | || | Sbjct 52079 AATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGAC 52138 Query 5844 CCAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCAT 5903 ||| ||| || | ||||| | ||||| | || | |||| || || || || | Sbjct 52139 CCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCACCGT 52198 Query 5904 TGTAAAGCCATTCATCGA--GATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAAT 5961 |||| ||||||||||| | ||| || ||||||||||| || || ||||| || ||||| Sbjct 52199 TGTATAGCCATTCATCAACGGAT--GCAGCTTCCCAGATCGGGTAAAAGTGCAAACCAAT 52256 Query 5962 TGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCC 6021 ||| || | || | || ||| || || || || |||||||| || || |||||||| Sbjct 52257 AGCGGCAGAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCGTAAAGAAGAGATCC 52316 Query 6022 TGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATAT 6081 | || |||||||| || || || || || ||||| || ||||| | |||||| | || Sbjct 52317 AGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAAT 52376 Query 6082 AAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATA 6141 ||| | | ||||||||| || | | || ||||| || ||||||||||| || | || Sbjct 52377 AAAAACGGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTA 52436 Query 6142 GAGGCGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 || ||||| | ||||| || | ||||| |||||| Sbjct 52437 AAGACGGTTTTCAGTGCTGGTTATCCAGTTACAGAA 52472 >seq80 Length=21647715 Score = 437 bits (484), Expect = 3e-118 Identities = 674/955 (71%), Gaps = 14/955 (1%) Strand=Plus/Minus Query 5203 AAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGGTTGGCACGGTT 5262 ||| ||||||||||||||||| ||||| ||||| ||||||||| |||| || |||||||| Sbjct 17114421 AAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATAACAAGATTAGCACGGTT 17114362 Query 5263 CAGGACATCTGCCCAAGTGGGAACGA----TTCTACCGCTAGAGTCAACGACTGACTGAT 5318 | | ||| |||||||| || | |||| ||| ||||| | ||| | | Sbjct 17114361 AATAATATCAGCCCAAGTATTAATAACACGTTCTTGA-CTA---TCAACTATTGATGGGT 17114306 Query 5319 TGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGCCATA 5378 |||| | || || || || || |||||||||||| || || | || |||| ||| | Sbjct 17114305 TGAAACTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTAAACCAAA 17114246 Query 5379 TGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTAAAGCTAG 5438 | || || ||||||| || | ||||||||||||| |||| ||||| || |||| Sbjct 17114245 TAGCTACTACCGGCCAAGCTGCTAAGAAGAAATGTAAAGAACGGGAGTTGTTGAAACTAG 17114186 Query 5439 CATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTTTCTT 5498 |||| |||||||| | || ||||| ||| | ||||| | |||||||| || |||| || Sbjct 17114185 CATATTGGAAGATCAATCGGCCAAAATAGTCGTGAGCAACTACAATGTTGTAAGTTTTTT 17114126 Query 5499 CCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTCACGAATGA 5558 | ||||| |||||| | || || | || ||| | | || ||||| | || | Sbjct 17114125 CTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCA 17114066 Query 5559 GCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAATACCCCAG 5618 |||||| || | | |||||||||||| || | | || |||||||| |||| Sbjct 17114065 AACTAGAAGTTACCAAAGAACCATGCATAGCACTAAATAGGGAACCGCCGAATACACCAG 17114006 Query 5619 CAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACA 5678 | ||||| | |||||| || || |||||||| || ||||| || |||| |||||| | || Sbjct 17114005 CTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTAGAATACAATCA 17113946 Query 5679 TAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCCTGTCCGA 5738 ||||||| |||||||||||||| | ||||||||||||||| |||||||| || | | Sbjct 17113945 TAAAGTTGAAAGTACCAGAGATTCATAGAGGCATACCATCATAAAAACTTCCTTGACAAA 17113886 Query 5739 AAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATATGCTACGCAA 5797 ||||| || || || | ||||| | || ||||| || ||||||||||| || || Sbjct 17113885 TTGGGTAGTTCAAGAAAACAGCAGTAG-CAGCTGCAACTGGAGCTGAATATGCAACAAAA 17113827 Query 5798 ATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTAAGCTGCG 5857 ||||| || |||| || | | | ||||||||||||| | || |||| ||| || Sbjct 17113826 ATCCAAGGACGCACACCCAGACAGAAACTAAGTTCCCACTCACGACCCATATAACAAGCT 17113767 Query 5858 ATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAGCCATTCA 5917 | ||||| | ||||| | || | |||| || | | || ||||| ||||||||| Sbjct 17113766 ACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAAGACAACCGTTGTATAGCCATTCA 17113707 Query 5918 TCGA--GATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTGGAGCTGG 5975 || | ||| || |||||| |||| || || ||||| || ||||| ||| | | | Sbjct 17113706 TCAACGGAT--GCAGCTTCCTAGATCGGGTAAAAGTGCAAACCAATAGCGACATAAGTAG 17113649 Query 5976 GTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGTTCAC 6035 | | || | | || || || || |||||||| || || ||||||| | || ||||||| Sbjct 17113648 GAATAATGACACCAGAAATAATATTGTTTCCGTAAAGAAGAGATCTAGAAACAGGTTCAC 17113589 Query 6036 GTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGTAGTTG 6095 || || || || || ||| | || || | | |||||| | ||||| | | ||||| Sbjct 17113588 AAATACCATCAATATCTACTAGAGGAACAACAATGAATGCGATAATAAAAACGGAAGTTG 17113529 Query 6096 CGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCGGTT 6150 || | || | | || |||| ||| ||||||||||| || | || || ||||| Sbjct 17113528 CGTTCAATAAGGTAGGGATCACTAAAACACCAAACCATCCAATGTAAAGACGGTT 17113474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152649309965760