Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq153 571 2e-158 seq80 450 4e-122 seq90 123 8e-24 >seq153 Length=83015 Score = 571 bits (632), Expect = 2e-158 Identities = 726/999 (73%), Gaps = 0/999 (0%) Strand=Plus/Plus Query 25437 TGTAGACTCAGCAGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAAC 25496 || || |||| ||| |||| ||| |||||||||||||| || ||||| ||||||||||| Sbjct 51474 TGGAGCCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAAC 51533 Query 25497 TTCCATGCCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTT 25556 |||||| || | || |||||||||| ||| ||||||||||| | || | ||| | Sbjct 51534 TTCCATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTG 51593 Query 25557 GGAATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGAC 25616 |||||| ||||| || ||||| || || || || || || |||||||||||| | Sbjct 51594 ACTATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAAT 51653 Query 25617 TCCCATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACT 25676 || | ||| |||| ||| || | || |||||||| || | ||||||||||||| Sbjct 51654 ACCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGA 51713 Query 25677 ACGGCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGC 25736 |||| || || || |||||||| |||||||| | || ||||| || || ||||| || Sbjct 51714 ACGGGAGTTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGC 51773 Query 25737 AACAATGTTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAG 25796 |||||||| || || ||||||||||| |||||| | || || | || ||||||| Sbjct 51774 TACAATGTTGTAAGTTTCTTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATT 51833 Query 25797 CCCAGTTGTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAA 25856 | || ||||| | || | ||||| || | || ||||||||| |||| Sbjct 51834 TTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAG 51893 Query 25857 AGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTG 25916 | || |||||||| || || ||||| | ||| || || || |||||||| || ||||| Sbjct 51894 GGAACCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTG 51953 Query 25917 TTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATC 25976 || ||||| || |||| |||||| |||||||| || || || || |||||||||||||| Sbjct 51954 CTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATC 52013 Query 25977 AGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGG 26036 ||| ||||| ||||| |||| ||||||| ||||| |||||| || ||||||||||| Sbjct 52014 AGAAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGG 52073 Query 26037 GGCTGAATAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTG 26096 |||||||| || ||| ||||| || | ||| || || | ||||||||||||| | Sbjct 52074 AGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTC 52133 Query 26097 TCGTCCCAAGTAAGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCC 26156 || |||| ||| | | || | | |||||| | ||||| |||| ||| || || Sbjct 52134 ACGACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACC 52193 Query 26157 ACCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACC 26216 |||||| || | ||| || || | || ||||||||||||||| ||||| ||||| | ||| Sbjct 52194 ACCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGGTAAAAGTGCAAACC 52253 Query 26217 GATTGCGTTAGATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGC 26276 || ||| ||| | || | || || || || || || |||||||| || || | | Sbjct 52254 AATAGCGGCAGAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCGTAAAGAAGAGA 52313 Query 26277 TCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAAT 26336 ||| || ||||| |||||||||||||| ||||| || ||||| ||||||| ||||| || Sbjct 52314 TCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGAT 52373 Query 26337 TAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCAC 26396 | ||| | | ||| || || | | ||||||||| | || |||||||| || | Sbjct 52374 AATAAAAACGGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAAT 52433 Query 26397 ATAGAGGCGGTTGTTTGTACTTGTAACCCAGTCACATAA 26435 || || ||||| | || || || | ||||| ||| || Sbjct 52434 GTAAAGACGGTTTTCAGTGCTGGTTATCCAGTTACAGAA 52472 >seq80 Length=21647715 Score = 450 bits (498), Expect = 4e-122 Identities = 673/953 (71%), Gaps = 2/953 (0%) Strand=Plus/Minus Query 25457 AGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCGGCAC 25516 ||| ||||||||||||||| || ||||| ||||||||||||||||| | | | |||| Sbjct 17114425 AGTAAAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATAACAAGATTAGCAC 17114366 Query 25517 GGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGACTGAT 25576 |||||| ||| ||||||||||| | || | | | | |||||| | ||| | | Sbjct 17114365 GGTTAATAATATCAGCCCAAGTATTAATAACACGTTCTTGACTATCAACTATTGATGGGT 17114306 Query 25577 TGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGCCATA 25636 |||| | || || || || || |||||||||||| | || | ||| |||| ||| | Sbjct 17114305 TGAAACTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTAAACCAAA 17114246 Query 25637 T-GCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAGCTA 25695 | || | | || |||||||| || | ||||||||||||| |||| || || || ||| Sbjct 17114245 TAGCTACT-ACCGGCCAAGCTGCTAAGAAGAAATGTAAAGAACGGGAGTTGTTGAAACTA 17114187 Query 25696 GCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCT 25755 ||||| |||||||| | || ||||| ||| | ||||| | |||||||| || || | | Sbjct 17114186 GCATATTGGAAGATCAATCGGCCAAAATAGTCGTGAGCAACTACAATGTTGTAAGTTTTT 17114127 Query 25756 TCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGAATA 25815 |||||||| |||||| | || || | || ||||||| | || ||||| | || Sbjct 17114126 TCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATC 17114067 Query 25816 AGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCT 25875 | ||||| || | | || ||||||||| |||| | || |||||||| || Sbjct 17114066 AAACTAGAAGTTACCAAAGAACCATGCATAGCACTAAATAGGGAACCGCCGAATACACCA 17114007 Query 25876 GCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAAC 25935 || ||||| | ||| || || || |||||||| || ||||| || |||| || |||| | Sbjct 17114006 GCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTAGAATACAATC 17113947 Query 25936 ATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCA 25995 ||||| |||||||| || || || | ||||||||||||||| | ||||| ||||| | | Sbjct 17113946 ATAAAGTTGAAAGTACCAGAGATTCATAGAGGCATACCATCATAAAAACTTCCTTGACAA 17113887 Query 25996 AAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACAT 26055 | |||||| ||||| |||||| || |||||||| || |||||||| || ||| | Sbjct 17113886 ATTGGGTAGTTCAAGAAAACAGCAGTAGCAGCTGCAACTGGAGCTGAATATGCAACAAAA 17113827 Query 26056 ATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAG 26115 ||||| || | || || || | ||||||||||||| | || |||| ||| | Sbjct 17113826 ATCCAAGGACGCACACCCAGACAGAAACTAAGTTCCCACTCACGACCCATATAACAAGCT 17113767 Query 26116 ATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAACCACTCG 26175 | || | | |||||| | ||||| |||| ||| | | |||||| || | ||| || Sbjct 17113766 ACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAAGACAACCGTTGTATAGCCATTCA 17113707 Query 26176 TCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGG 26235 || | || |||||||||| |||| ||||| ||||| | ||| || ||| | | | || Sbjct 17113706 TCAACGGATGCAGCTTCCTAGATCGGGTAAAAGTGCAAACCAATAGCGACATAAGTAGGA 17113647 Query 26236 ACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGA 26295 | || | || || || || |||||||| || || | | || || ||||| |||| | Sbjct 17113646 ATAATGACACCAGAAATAATATTGTTTCCGTAAAGAAGAGATCTAGAAACAGGTTCACAA 17113587 Query 26296 ATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCT 26355 |||||||| ||||| || |||| || ||| ||||| || | ||| | | ||| Sbjct 17113586 ATACCATCAATATCTACTAGAGGAACAACAATGAATGCGATAATAAAAACGGAAGTTGCG 17113527 Query 26356 GTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTT 26408 | || | | |||||||| || || |||||||| || | || || ||||| Sbjct 17113526 TTCAATAAGGTAGGGATCACTAAAACACCAAACCATCCAATGTAAAGACGGTT 17113474 >seq90 Length=4948294 Score = 123 bits (136), Expect = 8e-24 Identities = 163/224 (73%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 25459 TCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCGGCACGG 25518 || ||||||||||| || || |||| | ||||||||||||||| || | || ||||| Sbjct 3477193 TCTAGAGGGAAGTTTTGAGCATTACCTTAATGCATAACTTCCATACCAAGGTTAGCACGA 3477134 Query 25519 TTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGACTGATTG 25578 |||| ||| ||| ||||||| | || | || | |||||| ||||| || ||| Sbjct 3477133 TTAATAATATCAACCCAAGTATTAATAACACGTCATTGACTATCAACTACTGATTGGTTG 3477074 Query 25579 AAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGCCA--TA 25636 || ||||| || || ||||| ||||| | |||| | || | ||| |||| ||| || Sbjct 3477073 AAATTAAAACCATTTAGATTGAAAGCTACAGTGCTAATACCTAAAGCAGTAAACCAAATA 3477014 Query 25637 TGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGG 25680 || | | || |||||||| || | ||||||||||||| |||| Sbjct 3477013 TGTA--TTACCGGCCAAGCCGCTAAGAAGAAATGTAAAAAACGG 3476972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151993311212160