Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq126 95.1 1e-14 >seq126 Length=8766530 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/223 (70%), Gaps = 8/223 (4%) Strand=Plus/Plus Query 29877 GACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAG 29936 ||| ||||| | ||| | || || ||||||||| || |||||||| ||||| || || Sbjct 4332224 GACATGAGCGAGGATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGTACACCAAG 4332283 Query 29937 CCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTC-GCTCACGTAAA 29995 ||||||||| | || | ||| || | ||||| ||||||||||| || ||| || || | Sbjct 4332284 GCCCATGTCCGCTGAACGCTGATACATTTGACATGAGAGCTCTCCTTCTGCT-ACATAGA 4332342 Query 29996 ACTG---ACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCC 30052 |||| | ||| |||| || |||||||| ||||| | | || || |||| Sbjct 4332343 ACTGTGCAAACA---TGTGACATGGAGGAAGCGCCATCAATTTGAGATCAGAAGGATTCC 4332399 Query 30053 AGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 30095 | || | | |||||||| | || || || |||||| |||| Sbjct 4332400 AAGCTGATAATATGATGCGTCGATCATCAGGATTGTTCTTGAT 4332442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408616803195680