Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq101 118 8e-22 seq139 111 1e-19 seq80 111 1e-19 seq64 109 4e-19 seq92 95.1 9e-15 seq110 89.7 4e-13 >seq101 Length=14560423 Score = 118 bits (130), Expect = 8e-22 Identities = 167/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 48536 GTCGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATC 48595 ||| || || | || |||||||||||||| || || |||||| || ||||||||||| Sbjct 13330120 GTCTCCACCACGAAGACGCAACACCAAATGAAGAGTCGACTCTTTCTGGATATTGTAATC 13330061 Query 48596 AGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCC-G 48654 | | | ||| | || || | ||| || ||||| |||||||||| ||| || ||| | Sbjct 13330060 CGCCAAGGTCCGACCATCCTCAAGCTGTTTTCCGGCGAATATCAGTCTCTGCTGGTCCGG 13330001 Query 48655 TGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCT 48714 ||||| | || |||||||| |||||| || ||| | | | | ||||| || Sbjct 13330000 TGGGATC-CCTTCCTTGTCCTGAATCTTAGCCTTGACATTATCAATCGTGTCTGAGCTCT 13329942 Query 48715 CCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 | ||||||| ||||| || || || ||||| || || ||||| |||||||| Sbjct 13329941 CAACCTCCAAGGTAATAGTCTTACCTGTCAATGTCTTCACAAAGATCTGCAT 13329890 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||||||| | ||| | || ||| || || ||||||||||| | | | | ||| Sbjct 13329879 AGACGCAACACAAGATGCAATGTAGACTCCTTCTGGATATTGTAATCCGCCAAAGTCCGA 13329820 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCG-TGGGAACGCCCTC 48667 | || || | ||| || ||||| || || |||| ||| || |||| ||||| | ||||| Sbjct 13329819 CCATCCTCAAGCTGTTTTCCGGCGAAGATAAGTCTCTGCTGGTCCGGTGGGATC-CCCTC 13329761 Query 48668 CTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGT 48727 |||||| |||||| || ||| | | | ||||| ||| ||||||| || Sbjct 13329760 CTTGTCCTGAATCTTAGCCTTGACATTGTCTATTGTGTCTGAGCTCTCAACCTCCAAAGT 13329701 Query 48728 AATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| || | ||| || || ||||||||||| Sbjct 13329700 GATGGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 13329662 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| ||||||||| || |||||||| | | | ||| | || || | ||| Sbjct 13329636 TGAAGTGTGGACTCTTTTTGGATGTTGTAATCCGCCAAGGTCCGACCATCCTCGAGCTGT 13329577 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || ||||| ||||| |||| ||| || |||| || | || |||||||| |||||| Sbjct 13329576 TTTCCGGCGAATATGAGTCTCTGCTGGTCCGGAGGGATTCCTTCCTTGTCTTGAATCTTC 13329517 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || ||| | | | | ||||| ||||||||||| || || |||||||| || Sbjct 13329516 GCCTTCACATTATCAATGGTGTCTGAGCTCTCCACCTCCAAGGTTATTGTTTTTCCGGTG 13329457 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 | || || ||||| || ||||| Sbjct 13329456 AGTGTCTTGACAAAGATTTGCAT 13329434 >seq139 Length=20634497 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 48536 GTCGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATC 48595 ||| || || | || |||||||||||||| || ||| |||||| || ||||||||||| Sbjct 11242696 GTCTCCACCACGAAGACGCAACACCAAATGGAGAGTGGACTCTTTCTGGATATTGTAATC 11242637 Query 48596 AGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGT 48655 | || | ||| | || || | ||||||||| || ||||| |||| || || || | Sbjct 11242636 GGCAAGCGTGCGACCATCTTCAAGCTGCTTACCAGCGAATATAAGTCTTTGCTGGTCTGG 11242577 Query 48656 GGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTC 48715 || | ||||| ||||| ||||| ||| ||| | | | | ||||| ||| Sbjct 11242576 AGGGATTCCCTCTTTGTCCTGGATCTTGGCTTTCACATTATCGATGGTGTCTGAGCTCTC 11242517 Query 48716 CACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||||| || || ||||| || |||| ||| || ||||| || ||||| Sbjct 11242516 AACCTCCAAGGTGATAGTTTTACCAGTCAGAGTCTTCACAAAGATTTGCAT 11242466 >seq80 Length=21647715 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || |||||| |||||||||||||||| | | | ||| | || || Sbjct 2367226 ACCAAGTGAAGAGTCGACTCTTTCTGAATATTGTAATCAGCCAAAGTCCGACCATCCTCT 2367167 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCC-GTGGGAACGCCCTCCTTGTCGCT 48676 || |||||||| || || || || | |||||||||| |||||| | || |||||||| Sbjct 2367166 AATTGCTTACCAGCGAAGATGAGCCTCTGTTGATCCGGTGGGATC-CCTTCCTTGTCCTG 2367108 Query 48677 AATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTT 48736 ||| || || ||| | | | || ||||| ||| ||||||| || ||||| || Sbjct 2367107 AATTTTAGCCTTCACATTATCAATAGTGTCTGAGCTCTCAACCTCCAAGGTTATCGTCTT 2367048 Query 48737 TCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| || || || || ||||| Sbjct 2367047 GCCAGTCAAAGTCTTCACGAAGATTTGCAT 2367018 >seq64 Length=9524166 Score = 109 bits (120), Expect = 4e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||||||||||||||| || ||||||||| ||||||||||||| || | | Sbjct 3905529 AGACGCAACACCAAATGTAGAGTTGACTCTTTTTGGATATTGTAATCAGCAAGTGTCCTT 3905470 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | ||||||||| | ||||| |||| ||| || | | || | || ||| Sbjct 3905469 CCGTCTTCAAGCTGCTTACCATCGAATATAAGTCTCTGCTGGTTCAGAGGGATTCCTTCC 3905410 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || ||| | | | | ||||| ||| ||||||| || Sbjct 3905409 TTGTCCTGGATCTTTGCCTTCACATTATCAATGGTGTCTGAGCTCTCAACCTCCAAAGTG 3905350 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||||||| || || ||| || ||||| |||||||| Sbjct 3905349 ATCGTTTTCCCAGTTGGAGTCTTGACAAAGATCTGCAT 3905312 >seq92 Length=17487894 Score = 95.1 bits (104), Expect = 9e-15 Identities = 139/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 |||||| ||||| ||||||||||| ||| ||||| | || || | |||||| || ||||| Sbjct 10600611 CTCTTTCTGAATGTTGTAATCAGAAAGAGTTCGACCATCTTCAAGCTGCTTCCCTGCAAA 10600670 Query 48635 TATCAGTCGCTGTTGA-TCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAG 48693 || |||| ||||||| || | |||| | || |||||||| |||||| || ||| Sbjct 10600671 GATTAGTCTCTGTTGATTCAGAGGGATC-CCTTCCTTGTCCTGAATCTTGGCCTTCACAT 10600729 Query 48694 AACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTA 48753 | | | || || ||| ||||| | ||||| || || || || | ||| || | Sbjct 10600730 TGTCAATCGTATCAGAGCTCTCAACCTCAAGAGTAATAGTCTTACCGGTAAGAGTCTTGA 10600789 Query 48754 CAAAAATCTGCATC 48767 | || ||||||||| Sbjct 10600790 CGAATATCTGCATC 10600803 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || ||| ||||||||||||||||| | | | ||| | || || Sbjct 10601050 ACCAAGTGGAGAGTCGACTCCTTTTGAATATTGTAATCTGCCAATGTACGACCATCCTCA 10601109 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | || ||||||||||| || |||| |||||||||| || | || |||||||| | Sbjct 10601110 AGTTGTTTACCGGCAAAGATGAGTCTTTGTTGATCCGGAGGGATCCCTTCCTTGTCTTGA 10601169 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| ||| ||| | | || ||||| ||| || || | || || ||| | Sbjct 10601170 ATCTTAGCTTTAACATTGTCAATAGTGTCTGAGCTCTCAACTTCTAGGGTTATGGTTGTA 10601229 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | ||| || ||||| |||||||| Sbjct 10601230 CCGGTAAGAGTCTTGACAAATATCTGCAT 10601258 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || || || |||||||| | || ||||| | || || | || ||||| || || Sbjct 10600840 TCCTTCTGGATGTTGTAATCTGCAAGCGTTCGACCATCCTCAAGTTGTTTACCTGCGAAG 10600899 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || |||| ||||||||||| || | || |||||||| |||||| ||| || Sbjct 10600900 ATGAGTCTCTGTTGATCCGGAGGGATCCCTTCCTTGTCTTGAATCTTAGCTTTAACGTTG 10600959 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | || ||||| |||||| || | ||||| ||||| || || | ||||| ||| Sbjct 10600960 TCAATAGTGTCTGAGCTCTCCACTTCTAGGGTAATGGTTTTACCGGTGAGGGTTTTCACA 10601019 Query 48756 AAAATCTGCAT 48766 || |||||||| Sbjct 10601020 AATATCTGCAT 10601030 >seq110 Length=4329799 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || |||| ||| ||||| || || || |||||| || || ||||| |||| | Sbjct 2036212 CCACCTCTGAGCCTCAAGACCAAGTGAAGAGTTGACTCTTTCTGGATGTTGTAGTCAGCT 2036153 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | ||||| | || || | |||||||| ||||||||||| | ||||||||| | || Sbjct 2036152 AAAGTTCGACCATCTTCAAGTTGCTTACCAGCAAATATCAGCCTCTGTTGATCTGGTGGT 2036093 Query 48660 ACGCCCTCCTTGTC 48673 | ||||| ||||| Sbjct 2036092 ATTCCCTCTTTGTC 2036079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380936857171680