Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq153 619 1e-172 seq80 495 4e-135 seq90 98.7 1e-15 >seq153 Length=83015 Score = 619 bits (686), Expect = 1e-172 Identities = 739/999 (74%), Gaps = 18/999 (2%) Strand=Plus/Minus Query 162502 TGTAACTGGGTCACCTCAGTTGACAATCGCATCTATGTCGGTTGGTTCGGTGTCTTGATG 162561 ||||||||| | ||| ||| || || | || | || ||||| ||||| |||||| Sbjct 52469 TGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATG 52410 Query 162562 ATCCCTTGCTTGCTCGCAGCAGCAACTTGC---TTCATCATTGCATTCATTGCAGCACCT 162618 |||||| ||| | | ||| |||| | || || || ||||||||||| || ||| Sbjct 52409 ATCCCTACCTTATTGACCGCA---ACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCT 52353 Query 162619 CCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTTCTCTATGGTAACAAC 162678 ||||| ||||| |||||||| | ||||||||| | || || ||||| || || ||||| Sbjct 52352 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 52293 Query 162679 ATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATC 162738 || || |||||||| | |||||| ||| ||||||||| | ||||| || || ||| Sbjct 52292 ATTATTTCTGGTGCCATTATTCCTACTTCTGCCGCTATTGGTTTGCACTTTTACCCGATC 52233 Query 162739 TGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTC 162798 |||||||| ||| | ||||||| ||| | || || ||||| |||| |||| | || Sbjct 52232 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGTT 52173 Query 162799 TTCCACTTCCTTATCGGAATCACAGCATACTGT---GGTCGTCAGTGGGAACTTTCTTAC 162855 | ||||| | | || | ||| | | | |||||| ||||||||||| || | Sbjct 52172 CTACACTTTTTACTTGGTGT---AGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTC 52116 Query 162856 CGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCATTC 162915 || | ||||||||||||||||| ||||||||| || || || || | || || Sbjct 52115 CGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACT 52056 Query 162916 GCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGT 162975 ||||| |||||| |||| || | |||||||| ||| ||||| | |||||||| || Sbjct 52055 GCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGA 51996 Query 162976 ATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCAC 163035 || ||||||||||| |||| ||| | || ||||| || ||||||||||| || |||||| Sbjct 51995 ATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCAC 51936 Query 163036 CCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCAC 163095 || || || ||| | || || || ||||||||||| ||||| || |||||||||||||| Sbjct 51935 CCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTTAGTGCTATGCAT 51876 Query 163096 GGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTAC 163155 ||||| | || |||||| | | ||||| ||||| || || | || || || | Sbjct 51875 GGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAA 51816 Query 163156 GGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTT 163215 ||||| | ||||| ||||||||||| |||||||||||||| |||||||| || || ||| Sbjct 51815 GGTTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTT 51756 Query 163216 GGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTT 163275 || || ||||||||||| ||||| |||||||||||| ||||| | || |||||| | Sbjct 51755 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCCCGTTCTTTACATTTCTTCTTA 51696 Query 163276 GCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTC 163335 || || | || || || | || ||||| ||||| | ||| | |||||||| ||| Sbjct 51695 GCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTC 51636 Query 163336 AACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGA---CGCAGGTGGTAAAGTGATT 163392 ||||| || |||||||| ||||||||||| || ||||| ||| || || ||| Sbjct 51635 AACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGT---GTTATT 51579 Query 163393 CCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGT 163452 ||||||||| ||||| ||||| | || |||||||||||||||||||| || ||| Sbjct 51578 AATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGT 51519 Query 163453 AATGCTCACAACTTCCCACTTGACCTTGCTGCTGCTGAG 163491 ||||||||||||||||| || ||||| ||||||| |||| Sbjct 51518 AATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 51480 >seq80 Length=21647715 Score = 495 bits (548), Expect = 4e-135 Identities = 680/944 (72%), Gaps = 16/944 (2%) Strand=Plus/Plus Query 162541 GGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGC---TTCATC 162597 || ||||| ||||| || |||||||| ||| | | | ||||||| | || || Sbjct 17113489 GGATGGTTTGGTGTTTTAGTGATCCCTACCTTATTG--AAC-GCAACTTCCGTTTTTATT 17113545 Query 162598 ATTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGT 162657 || |||||||||| | |||| ||| ||||| |||||||| | ||||||||| | | Sbjct 17113546 ATCGCATTCATTGTTGTTCCTCTAGTAGATATTGATGGTATTTGTGAACCTGTTTCTAGA 17113605 Query 162658 TCACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATT 162717 || ||||| || || ||||| || || ||||||| | |||||| || |||||| Sbjct 17113606 TCTCTTCTTTACGGAAACAATATTATTTCTGGTGTCATTATTCCTACTTATGTCGCTATT 17113665 Query 162718 GGTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGT 162777 ||| | ||||| || || |||| |||||| ||| | ||||||| ||| | || || ||| Sbjct 17113666 GGTTTGCACTTTTACCCGATCTAGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGT 17113725 Query 162778 GGACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGT---GGT 162834 | | || |||| | || | ||||| | | || | ||| | | | ||| Sbjct 17113726 TGTCTTTATGAACTAATTGTTCTACACTTTTTACTTGGTGT---AGCTTGTTATATGGGT 17113782 Query 162835 CGTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCT 162894 ||| ||||||||||| || | | | ||| ||||||||||||| | ||||||||| || Sbjct 17113783 CGTGAGTGGGAACTTAGTTTCTGTCTGGGTGTGCGTCCTTGGATTTTTGTTGCATATTCA 17113842 Query 162895 GCACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTC 162954 || ||||| | || || ||||| |||||| ||| || | ||||||| ||| Sbjct 17113843 GCTCCAGTTGCAGCTGCTACTGCTGTTTTCTTGAACTACCCAATTTGTCAAGGAAGTTTT 17113902 Query 162955 TCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCA 163014 | ||| | |||||||| | || ||||||||||| |||| ||| | || ||| | || Sbjct 17113903 TATGATGGTATGCCTCTATGAATCTCTGGTACTTTCAACTTTATGATTGTATTCTAGGCT 17113962 Query 163015 GAGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGT 163074 ||||||||||| || |||||||| || || ||| | || || || ||||||||||| ||| Sbjct 17113963 GAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGT 17114022 Query 163075 TCACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACT 163134 || || |||||||||||||| |||||| | || |||||| | | ||||| ||||| || Sbjct 17114023 TCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACTTCTAGTTTGATCAGGGAAACCACA 17114082 Query 163135 GAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATT 163194 || | || || || | ||||| | ||||| ||||||||| | |||||||||||| Sbjct 17114083 GAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAAAAACTTACAACATT 17114142 Query 163195 GTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCA 163254 || | |||||| | || ||||| || ||||||||||| ||||| |||||||||||| Sbjct 17114143 GTAGTTGCTCACGACTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCC 17114202 Query 163255 CGTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATG 163314 ||||| | || |||||| | || || | || || || || ||||| ||||| | Sbjct 17114203 CGTTCTTTACATTTCTTCTTAGCAGCTTGGCCGGTAGTAGCTATTTGGTTTACTGCTTTA 17114262 Query 163315 GGTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGAC 163374 ||| | |||||||| |||||||| || ||||||| ||||||| ||| | ||||| Sbjct 17114263 GGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAGTTTCAACCCATCAATAGTTGA- 17114321 Query 163375 GCAGGTGGTAAAGTG--ATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTA 163432 || || ||| ||| ||||||||| ||||| ||||| | || |||| || Sbjct 17114322 -TAGTCAAGAACGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAATCTTGTTA 17114380 Query 163433 TGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGAC 163476 ||||||||||||| || |||||||||||||||||||| ||| || Sbjct 17114381 TGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTTTAC 17114424 >seq90 Length=4948294 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/192 (72%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 163297 ATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTC 163356 || ||||| ||||| | ||| | ||| | || ||||| || || ||||| || ||| Sbjct 3477015 ATTTGGTTTACTGCTTTAGGTATTAGCACTGTAGCTTTCAATCTAAATGGTTTTAATTTC 3477074 Query 163357 AACCAATCCGTCGTTGACGCAGGTGGTAAAGTG--ATTCCTACTTGGGCAGATATCCTTA 163414 |||||||| || ||||| || | | ||| ||| |||||||| ||||| ||| Sbjct 3477075 AACCAATCAGTAGTTGAT--AGTCAATGACGTGTTATTAATACTTGGGTTGATATTATTA 3477132 Query 163415 ACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTG 163474 | | || |||||||||||||||||||| | |||||||||| |||||||| || | Sbjct 3477133 ATCGTGCTAACCTTGGTATGGAAGTTATGCATTAAGGTAATGCTCAAAACTTCCCTCTAG 3477192 Query 163475 ACCTTGCTGCTG 163486 | || | ||||| Sbjct 3477193 AACTAGATGCTG 3477204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553083693830400