Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq64 143 5e-29 >seq64 Length=9524166 Score = 143 bits (158), Expect = 5e-29 Identities = 555/864 (64%), Gaps = 20/864 (2%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || || ||||| ||||| ||||||||||| ||||||| | |||||| || Sbjct 404531 CTGGTAATCGCCAACTCTCTTCTCGAAGAAGTTTGTTTTCCCCTGAAGCGAGATAAGTTC 404472 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC----CGTGTC-AGGCCCATCTGTTCC 47953 ||| | || || || | |||||| ||| || | || || | | Sbjct 404471 CATCCAATCAAACGGATTAGCCACACCGTACACCTTGCCGTATCCAAGCGCACC-----C 404417 Query 47954 AGCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATG 48013 || || |||||| ||| | |||||||||| ||| ||| |||||| || | Sbjct 404416 AGAAGCCTATCCGCAACGAATTCGATGTATTGACTCATTAGGTCACGGTTCATCCCCACC 404357 Query 48014 AGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACA 48073 | | ||| | || | | ||||||| |||| |||| ||||| || | || Sbjct 404356 AACGCGCAGGGAAGCGCGTCGCACACAAACTCCCTCTCGATCTCGACGGCGTCGCAGACG 404297 Query 48074 ATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAG 48133 || || ||||| || ||| | || | | || | | || |||| || ||| Sbjct 404296 ATTGATTTCACGCGCTCTTCCGAGAGCTTCGTCCTCAAGAGAGTG---TAGATCAGGCAC 404240 Query 48134 GCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCA 48193 || || || | ||| ||||||||||| || ||| | | | ||||||||| | || Sbjct 404239 GCGAAATCGCAGTGTAAGCCTTCGTCTCGCGAGATCAACTCATTGGAGAAGGTTAATCCG 404180 Query 48194 GGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATG 48253 ||||||| || | || || ||||||||||| | |||| || ||||||||||| Sbjct 404179 GGCATGAGACCGCGCTTCTTAAGCCAGAAAATCGAGCAGAAACTACCGGAGAAGAAGATA 404120 Query 48254 CCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAA-GCGTTCTTGTCTGAGAT 48312 || || || ||||| || || | ||| |||| | | | || ||| ||| Sbjct 404119 CCTTCGACGCAGGCGAAAGCCACGATACGCTCGGCGAAGGTCTGAGATCC-GTC---GAT 404064 Query 48313 CCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAA 48372 ||| | | |||||| | || |||||| || ||| || || ||||| ||||| || || Sbjct 404063 CCATGTCATCGCCCACTGGGCTTTCTTCGCGACGCAAGGGATGGTCTCGATGGCGCGAAA 404004 Query 48373 GAGCTTCTTGCACTCACCTGC-GTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCT 48431 ||| | | | ||| | || |||| | || || ||| || |||||||| Sbjct 404003 GAGATGGTCTCTCTC-CTTGTTGTCCTTGATGTATGTGTCGAGGAGGAGGCTGTACATCT 403945 Query 48432 CAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCT 48491 | ||||| | ||||| || ||||||||||| |||||||| || | ||||| | || | Sbjct 403944 CGGAGTGGATGTTCTCGATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGACTT 403885 Query 48492 GCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAA 48551 | || || | ||||| ||||||||| || || || || || || || | Sbjct 403884 GAACATCGGACATGAATCGGGAAGCCAGATTCTCGAGAACGATTCCGTCGGATGCGGCGA 403825 Query 48552 AGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCT 48611 |||| || || || ||||| | ||| || |||||| || | ||||| | ||| | Sbjct 403824 AGAAAGCGAGCACGTGTTTGATGAAGTGTCGCTCGCCGTCGTTGAGATTCTCCCAATCGC 403765 Query 48612 GTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGT 48671 | |||||| || || ||||| || | ||||| ||||| || || || |||| Sbjct 403764 GACCGTCTTGTGACAAATCGACTTCCTCGGCCGTCCAAAAGGATGCCTCGGCCTTCTTGT 403705 Query 48672 ACATGCCCCATATGTCCGGATAGT 48695 |||| |||| || | || |||| Sbjct 403704 ACATCTCCCAGATCTGTGGGTAGT 403681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931530936934400