Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq64 120 6e-22 >seq64 Length=9524166 Score = 120 bits (132), Expect = 6e-22 Identities = 539/850 (63%), Gaps = 16/850 (2%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||||||||||||||||| | || ||||| ||||| || | ||| || Sbjct 403692 ATCTGGGAGATGTACAAGAAGGCCGAGGCATCCTTTTGGACGGCCGAGGAAGTCGATTTG 403751 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTAC 25596 | | ||| || ||| | ||| | | | ||||| || || |||| || Sbjct 403752 TCACAAGACGGTCGCGATTGGGAGAATCTCAACGACGGCGAGCGACACTTCATCAAACAC 403811 Query 25597 GTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTC 25656 ||| | || ||||| || || || || || || || |||||||||| ||||| Sbjct 403812 GTGCTCGCTTTCTTCGCCGCATCCGACGGAATCGTTCTCGAGAATCTGGCTTCCCGATTC 403871 Query 25657 ACCAGGGAAGTGCAGTACGTGGAGGCCAAGTG-TTTCTACGGTTTCCAGATGGCCATCGA 25715 | || || || | |||||| ||| |||||||||||||||||| || ||||| Sbjct 403872 ATGTCCGATGTTCAAGTCTCGGAGGCGC-GTGCTTTCTACGGTTTCCAGATCGCGATCGA 403930 Query 25716 AAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCCGA 25775 || | ||||| ||| |||| | || || || ||||| | ||| | || Sbjct 403931 GAACATCCACTCCGAGATGTACAGCCTCCTCCTCGACACATACATCAAGGACAACAAGGA 403990 Query 25776 GAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTG 25835 |||||| | || ||| | ||||||||| ||| || || || || ||| || | ||| Sbjct 403991 GAGAGACCATCTCTTTCGCGCCATCGAGACCATCCCTTGCGTCGCGAAGAAAGCCCAGTG 404050 Query 25836 GGCCATGAAGTGGATCAACAGCCAGAGCGC-TACGTTTGGCGAGCGGCTGGTAGCCTTTG 25894 ||| |||| |||||| | | || | | || || | |||||| | || || || | Sbjct 404051 GGCGATGACATGGATC----GACGGATCTCAGACCTTCGCCGAGCGTATCGTGGCTTTCG 404106 Query 25895 -CTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAGCA 25952 |||| || || || ||||| ||| |||| || ||| | || |||||||| ||| | Sbjct 404107 CCTGC-GTCGAAGGTATCTTCTTCTCCGGTAGTTTCTGC-TCGATTTTCTGGCTTAAGAA 404164 Query 25953 GAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCT 26012 | || ||||||||| | ||| ||||| ||| | ||| | ||||| || | Sbjct 404165 GCGCGGTCTCATGCCCGGATTAACCTTCTCCAATGAGTTGATCTCGCGAGACGAAGGCTT 404224 Query 26013 CCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCT-TCTCAAG 26071 ||| | ||||| || |||||| ||||||| | |||| || || || || ||| Sbjct 404225 ACACTGCGATTTCGCGTGCCTGATCTACAC---TCTCTTG-AGGACGAAGCTCTCGGAAG 404280 Query 26072 AGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNN 26131 || ||| | ||| || || || || |||||||||| ||||||| Sbjct 404281 AGCGCGTGAAATCAATCGTCTGCGACGCCGTCGAGATCGAGAGGGAGTTTGTGTGCGACG 404340 Query 26132 NNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTATG 26191 |||| |||||| || ||||| |||||||| || | | Sbjct 404341 CGCTTCCCTGCGCGTTGGTGGGGATGAACCGTGACCTAATGAGTCAATACATCGAATTCG 404400 Query 26192 TGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAACCCGT 26251 | || || || ||| | ||| ||| || || | ||| || | |||| |||| Sbjct 404401 TTGCGGATAGGCTTCTGGGTGCGCTTGGATACGGCAAGGTGTACGGTGTGGCTAATCCGT 404460 Query 26252 TCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGTCG 26311 | || | |||||| || ||| | | ||||| || |||||||| || ||||| || | Sbjct 404461 TTGATTGGATGGAACTTATCTCGCTTCAGGGGAAAACAAACTTCTTCGAGAAGAGAGTTG 404520 Query 26312 GCGACTATCA 26321 |||| || || Sbjct 404521 GCGATTACCA 404530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928842942310400