Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq92 95.1 1e-14 seq139 93.3 4e-14 seq126 91.5 1e-13 seq80 89.7 4e-13 seq110 86.0 5e-12 seq75 84.2 2e-11 >seq92 Length=17487894 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || || || | || || || ||||||||| ||| ||| ||| Sbjct 12099585 ATGCAAATCTTCGTTAAGACTCTTACAGGGAAGACCATTACCTTAGAAGTTGAAAGCTCA 12099644 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | | | ||| || || || ||||| ||| | || ||||||| Sbjct 12099645 GACACAATAGACAACGTAAAGGCTAAGATTCAAGATAAAGAAGGAATCCCTCCAGATCAA 12099704 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || |||||||||||||| || |||||| | || ||| | || |||| ||||| ||| Sbjct 12099705 CAAAGACTTATCTTTGCTGGTAAACAACTTGAGGATGGTCGTACATTGGCTGATTACAAC 12099764 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || ||||||| || ||||| ||| |||| | || || |||| ||||| Sbjct 12099765 ATCAAAAAAGAGTCAACTCTTCACTTGGTTCTTAGGTTGAGAGGTGGGAT 12099814 Score = 86.0 bits (94), Expect = 5e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| |||||||| ||||| | || ||||||||||||||| ||| ||| ||| Sbjct 10601030 ATGCAGATATTTGTGAAAACCCTCACCGGTAAAACCATTACCCTAGAAGTGGAGAGCTCA 10600971 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | | | || || || | || ||||| || || | || ||||| Sbjct 10600970 GACACTATTGACAACGTTAAAGCTAAGATTCAA-GACAAGGAAGGGATCCCTCCGGATCA 10600912 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||||||| ||||| || || |||||| | || ||| | ||| | || ||||| || Sbjct 10600911 ACAGAGACTCATCTTCGCAGGTAAACAACTTGAGGATGGTCGAACGCTTGCAGATTACAA 10600852 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||| || || ||||| || || ||| | || || | | || || ||||| Sbjct 10600851 CATCCAGAAGGAATCAACACTTCACCTTGTTCTACGTCTTCGTGGTGGGAT 10600801 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || || | || || || ||||| ||| ||| ||| ||| Sbjct 10601486 ATGCAAATCTTTGTTAAGACTCTTACCGGGAAGACCATAACCCTAGAAGTTGAAAGCTCA 10601427 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | | ||||| || || || ||||| ||| | || ||| ||| Sbjct 10601426 GACACCATAGACAACGTCAAGGCTAAGATTCAAGATAAAGAAGGAATCCCTCCAGACCAA 10601367 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || |||||||||||||| || |||||| | || ||| | || || | ||||| ||| Sbjct 10601366 CAAAGACTTATCTTTGCTGGTAAACAACTCGAGGATGGTCGTACATTGTCGGATTACAAC 10601307 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || |||||||| || || || ||| |||| | || || |||| || || Sbjct 10601306 ATCCAAAAAGAGTCAACGCTCCACTTGGTTCTTAGGTTGAGAGGTGGTAT 10601257 >seq139 Length=20634497 Score = 93.3 bits (102), Expect = 4e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 28557 CAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCAGAG 28616 ||||| || ||||| || | ||||| || ||||| ||| || ||| ||| || Sbjct 14478708 CAAATCTTCGTAAAGACTCTCACGGGCAAGACCATAACCTTAGAGGTCGAAAGTTCCGAC 14478649 Query 28617 ACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAACAG 28676 || |||| | ||||| ||| ||| |||||||| || | | ||| || || Sbjct 14478648 ACAGTGGAAAACGTCAAGGCAAAGATCCAGGACAAAGAAGGCATTTCTTCAGACCAGCAA 14478589 Query 28677 AGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAACATT 28736 ||||| |||||||| ||||||||| | |||||| | || |||| ||||| |||||| Sbjct 14478588 AGACTGATCTTTGCCGGCAAACAACTTGAAGATGGTCGTACATTGGCAGATTACAACATT 14478529 Query 28737 CAAAAAGAATCTACTCTGCACATGGT 28762 ||||| | || ||||| ||| |||| Sbjct 14478528 CAAAAGAAGTCAACTCTCCACTTGGT 14478503 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| |||||||| || || || |||||||| ||||| || || ||| || Sbjct 14478028 ATGCAGATATTTGTCAAGACGTTGACGGGTAAGACCATAACACTTGAGGTGGAGAGCTCG 14477969 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || ||| | | | || | ||| || || |||||||| || | || || ||| Sbjct 14477968 GATACGATTGACAATGTAAAGGCGAAGATTCAGGACAAAGAAGGGATCCCTCCGGACCAA 14477909 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 |||||||| |||||||| || ||||| | || ||| | || |||| ||||| ||| Sbjct 14477908 CAGAGACTAATCTTTGCCGGAAAACAGCTCGAGGATGGTCGCGCTTTGGCGGATTACAAC 14477849 Query 28734 ATTCAAAAAGAATCTACTCTGCA 28756 ||||| ||||| || ||||| || Sbjct 14477848 ATTCAGAAAGAGTCAACTCTTCA 14477826 >seq126 Length=8766530 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||||||||| ||||| |||| |||||||| |||||| ||| || || Sbjct 5178213 AATGCAAATATTTGTGAAAACCCTAACTGGTAAAACAATTACCTTAGAAGTTGAGAGCTC 5178154 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || ||| | | | | ||||| || || ||||| || ||| | || || || Sbjct 5178153 GGACACGATTGACAACGTCAAGGCGAAGATTCAAGACAAGGAAGGAATCCCTCCGGACCA 5178094 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||||||| ||||| || || ||||| | || ||| | ||| | || |||||||| Sbjct 5178093 ACAGAGACTCATCTTCGCTGGTAAACAGCTTGAGGATGGTCGCACTCTTGCAGATTATAA 5178034 Query 28733 CATTCAAAAAGAATCTACTCTGCAC 28757 ||||| || ||||| || || ||| Sbjct 5178033 TATTCAGAAGGAATCAACACTTCAC 5178009 >seq80 Length=21647715 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| || || |||| || |||||||| || ||| ||| ||| Sbjct 2366333 AATGCAAATCTTTGTCAAGACTCTAACTGGCAAAACCATCACACTAGAAGTTGAAAGTTC 2366392 Query 28613 AGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATC 28671 || || | | | || |||| || || | || |||||||| ||| | || |||| Sbjct 2366393 TGATACCATTGACAATGTCAAAGCTAAGATTCAG-GACAAAGAAGGAATCCCTCCGGATC 2366451 Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 28731 | ||||||||||||||||| || || |||| || ||| | || | || ||||| | Sbjct 2366452 AGCAGAGACTTATCTTTGCTGGAAAGCAATGAGAGGATGGTCGCACACTCGCTGATTACA 2366511 Query 28732 ACATTCAAAAAGAATCTACTCTGCAC 28757 | |||||||| || ||||| || ||| Sbjct 2366512 ATATTCAAAAGGAGTCTACACTTCAC 2366537 >seq110 Length=4329799 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706 |||||||||||| | || |||||||||||| || || ||||| || || ||| | ||| Sbjct 2036079 GACAAAGAGGGAATACCACCAGATCAACAGAGGCTGATATTTGCTGGTAAGCAACTTGAA 2036138 Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGTATTA 28766 ||| | |||| | || || || ||||| || ||||| || ||||| ||| |||| || Sbjct 2036139 GATGGTCGAACTTTAGCTGACTACAACATCCAGAAAGAGTCAACTCTTCACTTGGTCTTG 2036198 Query 28767 AG 28768 || Sbjct 2036199 AG 2036200 >seq75 Length=6520592 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || ||||| | || || || ||||| ||| ||| |||| || Sbjct 967473 ATGCAAATTTTCGTTAAAACTCTCACCGGCAAGACCATCACCCTCGAGGTGGAAAGCTCC 967532 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || ||| | | | | | || || ||| ||||| || ||| | ||| ||||| Sbjct 967533 GACACGATCGACAACGTTAAAGCCAAGATCCAGGACAAGGAAGGAATTCCCCCGGATCAG 967592 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || || |||||||| ||||| || ||||||||||| | || |||| ||||| ||| Sbjct 967593 CAAAGGCTTATCTTCGCGGGAAAGCAATTGGAAGACGGTCGCACGTTGGCTGATTACAAC 967652 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 || || || ||||| || || ||| |||| Sbjct 967653 ATCCAGAAGGAATCCACCCTTCACTTGGT 967681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425403970460640