Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq153 542 9e-150 seq80 434 3e-117 seq90 105 2e-18 >seq153 Length=83015 Score = 542 bits (600), Expect = 9e-150 Identities = 715/986 (73%), Gaps = 4/986 (0%) Strand=Plus/Plus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| ||||| |||||||| ||||||||||| || ||||||||||| | |||||||| Sbjct 51489 AGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTT 51548 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTACAATGGA 17953 ||| | ||| | | |||||||| ||| | || ||||| | | || | || Sbjct 51549 AGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTATCAACTACTGA 51608 Query 17954 TTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAG 18013 ||||||||| ||||| ||||| || || |||||||||||| || || | || |||| Sbjct 51609 TTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTAAA 51668 Query 18014 CCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAA 18073 ||| || | || |||||||| || ||||||||||||| | | | ||||| || Sbjct 51669 CCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGGGAGTTGTTGAA 51728 Query 18074 GCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGT 18133 |||||||| |||||||| | || ||||| || || ||||| || ||||| || || || Sbjct 51729 ACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACAATGTTGTAAGT 51788 Query 18134 CTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCT 18193 ||||||||||| || ||| | || || | || ||| ||| || || ||||| || Sbjct 51789 TTCTTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCT 51848 Query 18194 AATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATAC 18253 || | ||||| || | || ||||||||| |||| | || |||||||| Sbjct 51849 GATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAACCGCCGAATAC 51908 Query 18254 CCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATAC 18313 || || ||||| | ||| || || || |||||||| || ||||| || || |||||||| Sbjct 51909 ACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATAC 51968 Query 18314 GAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTG 18373 | ||| || ||||||||||| || || ||||||||||||||||| ||||| ||||| Sbjct 51969 AATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTG 52028 Query 18374 TCCAAAAGGATAAA-CGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGAATAAGCA 18431 |||| || || | | ||||| || | || || ||||||| || || || ||||| ||| Sbjct 52029 ACCAATTGGGTAGATCAAGAAA-ACAGCAGTAG-CAGCTGCAACAGGAGCTGAATATGCA 52086 Query 18432 ACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAA 18491 ||| |||||| || |||||||| || | ||||||||||||| | || ||||| ||| Sbjct 52087 ACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAA 52146 Query 18492 GCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAAC 18551 || | || | | |||||| | ||||| |||| ||| || || ||||| |||| | Sbjct 52147 CAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATAGC 52206 Query 18552 CACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGAT 18611 || || || | || ||||||||||||||| ||||| ||||| | ||| || ||| ||| Sbjct 52207 CATTCATCAACGGATGCAGCTTCCCAGATCGGGTAAAAGTGCAAACCAATAGCGGCAGAA 52266 Query 18612 GACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGC 18671 | || | || || || || || || |||||||| || || | | ||| || ||||| Sbjct 52267 GTAGGAATAATGGCACCAGAAATAATATTGTTTCCGTAAAGAAGAGATCCAGAAACAGGT 52326 Query 18672 TCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTA 18731 |||||||||||||| || || || ||||||||||||| ||||| || | ||| | | | Sbjct 52327 TCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAATAAAAACGGAA 52386 Query 18732 GCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGTTG 18791 | |||||| || | | ||||||||| | || |||||||| || | ||| || ||||| Sbjct 52387 GTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTT 52446 Query 18792 TTTGTACTCGTAACCCAGTCACATAA 18817 | || || || | ||||| ||| || Sbjct 52447 TCAGTGCTGGTTATCCAGTTACAGAA 52472 >seq80 Length=21647715 Score = 434 bits (480), Expect = 3e-117 Identities = 671/950 (71%), Gaps = 6/950 (1%) Strand=Plus/Minus Query 17844 AGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTTAGCTCTGTTG 17903 || |||||||| ||||||||||| || ||||||||||| | |||| ||||| | ||| Sbjct 17114420 AGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATAACAAGATTAGCACGGTTA 17114361 Query 17904 AGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTACAATGGATTGGTTGAAG 17963 | | |||||||| ||| | || || || | | || || ||| ||||||| Sbjct 17114360 ATAATATCAGCCCAAGTATTAATAACACGTTCTTGACTATCAACTATTGATGGGTTGAAA 17114301 Query 17964 TTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGCCATAT-GCA 18022 |||| ||||| || || |||||||||||| || || | || |||| ||| || || Sbjct 17114300 CTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTAAACCAAATAGCT 17114241 Query 18023 AGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAAGCTAGCATA 18082 | | || |||||||| || ||||||||||||| | | | ||||| || |||||||| Sbjct 17114240 ACT-ACCGGCCAAGCTGCTAAGAAGAAATGTAAAGAACGGGAGTTGTTGAAACTAGCATA 17114182 Query 18083 CTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGTCTCTTCTTC 18142 |||||||| | || ||||| ||| | ||||| | ||||| || || || | |||||| Sbjct 17114181 TTGGAAGATCAATCGGCCAAAATAGTCGTGAGCAACTACAATGTTGTAAGTTTTTTCTTC 17114122 Query 18143 TTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCTAATAAGTGA 18202 ||| || ||| | || || | || ||| ||| || || ||||| || || | Sbjct 17114121 TTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACT 17114062 Query 18203 GGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAAC 18262 ||||| || | | || ||||||||| |||| | || |||||||| || || || Sbjct 17114061 AGAAGTTACCAAAGAACCATGCATAGCACTAAATAGGGAACCGCCGAATACACCAGCTAC 17114002 Query 18263 ACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAA 18322 ||| | ||| || || || |||||||| || ||||| || || | |||||| | ||| || Sbjct 17114001 ACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTAGAATACAATCATAAA 17113942 Query 18323 ATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGG 18382 ||||||||||| || | ||||||||||||||| | ||||| ||||| | || || Sbjct 17113941 GTTGAAAGTACCAGAGATTCATAGAGGCATACCATCATAAAAACTTCCTTGACAAATTGG 17113882 Query 18383 ATA-AACGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGAATAAGCAACACAAATC 18440 || | ||||| || | || | |||||||| ||||| || ||||| |||||| ||||| Sbjct 17113881 GTAGTTCAAGAAA-ACAGCAGTA-GCAGCTGCAACTGGAGCTGAATATGCAACAAAAATC 17113824 Query 18441 CACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAAGCTGCGATG 18500 || || |||| ||| || | ||||||||||||| | || ||||| ||| || | Sbjct 17113823 CAAGGACGCACACCCAGACAGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACA 17113764 Query 18501 CCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCG 18560 || | | |||||| | ||||| |||| ||| | | ||||| |||| ||| || || Sbjct 17113763 CCAAGTAAAAAGTGTAGAACAATTAGTTCATAAAGACAACCGTTGTATAGCCATTCATCA 17113704 Query 18561 AGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACG 18620 | || |||||||||| |||| ||||| ||||| | ||| || ||| | | | || | Sbjct 17113703 ACGGATGCAGCTTCCTAGATCGGGTAAAAGTGCAAACCAATAGCGACATAAGTAGGAATA 17113644 Query 18621 ATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATA 18680 || | || || || || |||||||| || || | | || || ||||| |||| |||| Sbjct 17113643 ATGACACCAGAAATAATATTGTTTCCGTAAAGAAGAGATCTAGAAACAGGTTCACAAATA 17113584 Query 18681 CCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTT 18740 ||||| || || || ||||| || ||| ||||| || | ||| | | || |||| | Sbjct 17113583 CCATCAATATCTACTAGAGGAACAACAATGAATGCGATAATAAAAACGGAAGTTGCGTTC 17113524 Query 18741 AAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGTT 18790 || | | |||||||| | || |||||||| || | ||| || ||||| Sbjct 17113523 AATAAGGTAGGGATCACTAAAACACCAAACCATCCAATGTAAAGACGGTT 17113474 >seq90 Length=4948294 Score = 105 bits (116), Expect = 2e-18 Identities = 154/216 (71%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 17841 TCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTTAGCTCTG 17900 ||||| |||||||| |||||||||| | ||||||||||| | ||||||||||| | Sbjct 3477193 TCTAGAGGGAAGTTTTGAGCATTACCTTAATGCATAACTTCCATACCAAGGTTAGCACGA 3477134 Query 17901 TTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTACAATGGATTGGTTG 17960 || | | ||| |||| ||| | || ||| | | | || | ||||||||| Sbjct 3477133 TTAATAATATCAACCCAAGTATTAATAACACGTCATTGACTATCAACTACTGATTGGTTG 3477074 Query 17961 AAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGCCA--TA 18018 || || || ||||| ||||| ||||| | |||| || || | || |||| ||| || Sbjct 3477073 AAATTAAAACCATTTAGATTGAAAGCTACAGTGCTAATACCTAAAGCAGTAAACCAAATA 3477014 Query 18019 TGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTA 18054 || | | || |||||||| || ||||||||||||| Sbjct 3477013 TGTA--TTACCGGCCAAGCCGCTAAGAAGAAATGTA 3476980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151318112495040