Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq153 538 1e-148 seq80 417 2e-112 >seq153 Length=83015 Score = 538 bits (596), Expect = 1e-148 Identities = 718/995 (72%), Gaps = 2/995 (0%) Strand=Plus/Plus Query 21460 CCTCCACGGATGCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAA 21519 |||| || | || ||||| || ||||||||||| || || || |||||||| || || | Sbjct 51479 CCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCA 51538 Query 21520 AGCCAAGGTTGGCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAG 21579 |||||||| |||||||||| ||| |||||||| || || || || |||| | | | Sbjct 51539 TACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTAT 51598 Query 21580 CTAGCAGAGATTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAA 21639 | | | |||||||| || ||||||||||| | |||||||||||| || | || | Sbjct 51599 CAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTA 51658 Query 21640 GCGCAGCAAACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGG 21699 |||| ||||||||||||||| || ||||| || || | |||||||| | | ||||| Sbjct 51659 AAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGGG 51718 Query 21700 AATTATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAA 21759 | || || || ||||||||||||||||| | || |||||||| ||||||||||| |||| Sbjct 51719 AGTTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACAA 51778 Query 21760 TATTGTAAGTCTCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAG 21819 | |||||||| ||||| |||||||| || ||||||| | || || | | ||| | Sbjct 51779 TGTTGTAAGTTTCTTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTG 51838 Query 21820 TCGTCTCACGAATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCC 21879 | || || | || | || || |||| | ||| ||||||||| || | | Sbjct 51839 TGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAAC 51898 Query 21880 CACCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAG 21939 | || ||||| || || ||||| | ||||||||| || ||||||||||| |||||||||| Sbjct 51899 CGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAG 51958 Query 21940 CCTGGAACACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAA 21999 ||||||| || | ||| ||||||| || || || || || | |||||| ||||||||| Sbjct 51959 CCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAA 52018 Query 22000 AAGAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAG 22059 || || || |||| || || | | ||| |||||||| ||||| || |||||||| | Sbjct 52019 AACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTG 52078 Query 22060 AGTACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTC 22119 | || |||||| ||||| || | ||| || || || | |||||||||||||| || | Sbjct 52079 AATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGAC 52138 Query 22120 CCATGTAAGCAAAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGT 22179 |||| ||| | || |||| | ||||| | || | |||| | ||||| |||| Sbjct 52139 CCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCACCGT 52198 Query 22180 TGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGG 22239 |||| ||||||||||||| | ||||||||||| || ||||| ||||| | || || | Sbjct 52199 TGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGGTAAAAGTGCAAACCAATAG 52258 Query 22240 CATTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAG 22299 | | | |||| | ||| || || || || ||||| || || | || || |||| Sbjct 52259 CGGCAGAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCGTAAAGAAGAGATCCAG 52318 Query 22300 CGACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAA 22359 || ||||| || || ||||| || || || || || || ||| || |||||||||| Sbjct 52319 AAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAATAA 52378 Query 22360 AACAAGTTGTAGCGG-CAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAA 22418 || | || |||| ||| ||| | || ||||| | || || |||||||| | ||| Sbjct 52379 AAACGGAAGTTGCGGTCAATAAGGTA-GGGATCATCAAAACACCAAACCATCCAATGTAA 52437 Query 22419 AGACGGTTATTAGTAGAGGTGACCCAGGAACAAAA 22453 |||||||| | ||| ||| | |||| ||| || Sbjct 52438 AGACGGTTTTCAGTGCTGGTTATCCAGTTACAGAA 52472 >seq80 Length=21647715 Score = 417 bits (462), Expect = 2e-112 Identities = 669/958 (70%), Gaps = 2/958 (0%) Strand=Plus/Minus Query 21476 GTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTGGCACG 21535 || ||| ||||||||||| || || || |||||||| || || | |||| || ||||| Sbjct 17114424 GTAAAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATAACAAGATTAGCACG 17114365 Query 21536 GTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGATTGGTT 21595 ||||| ||| |||||||| || || || || || | | | | | | | ||| |||| Sbjct 17114364 GTTAATAATATCAGCCCAAGTATTAATAACACGTTCTTGACTATCAACTATTGATGGGTT 17114305 Query 21596 AAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAACCAAAT 21655 || |||||||||| | |||||||||||| || | || | |||| ||||||||| Sbjct 17114304 GAAACTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTAAACCAAAT 17114245 Query 21656 ACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAGCTAGC 21715 | |||| || ||||| || || | |||||||| | | |||||| || || || ||||| Sbjct 17114244 AGCTACTACCGGCCAAGCTGCTAAGAAGAAATGTAAAGAACGGGAGTTGTTGAAACTAGC 17114185 Query 21716 ATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTC 21775 |||||||||||| | || ||||||||| |||||||| | ||||| |||||||| | ||| Sbjct 17114184 ATATTGGAAGATCAATCGGCCAAAATAGTCGTGAGCAACTACAATGTTGTAAGTTTTTTC 17114125 Query 21776 CTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGAATGAG 21835 |||||||| || ||||||| | || || | | ||| || || || | || | Sbjct 17114124 TTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAA 17114065 Query 21836 TGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCGGC 21895 || || |||| ||| ||||||||| || | || || ||||| || || Sbjct 17114064 ACTAGAAGTTACCAAAGAACCATGCATAGCACTAAATAGGGAACCGCCGAATACACCAGC 17114005 Query 21896 CACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCAT 21955 ||||| | ||||||||| || ||||||||||| ||||||||||||| ||| || | ||| Sbjct 17114004 TACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTAGAATACAATCAT 17113945 Query 21956 GTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAA 22015 ||||||| || || || || | | |||||| ||||| ||||| || || | || Sbjct 17113944 AAAGTTGAAAGTACCAGAGATTCATAGAGGCATACCATCATAAAAACTTCCTTGACAAAT 17113885 Query 22016 CGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGAT 22075 || || | ||| |||||||| ||||| || || ||||| || || |||||||| || Sbjct 17113884 TGGGTAGTTCAAGAAAACAGCAGTAGCAGCTGCAACTGGAGCTGAATATGCAACAAAAAT 17113825 Query 22076 CCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAGAC 22135 ||| || | || || || | | |||||||||||||| || ||||| ||| | || Sbjct 17113824 CCAAGGACGCACACCCAGACAGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTAC 17113765 Query 22136 GCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCATC 22195 |||| | ||||| | || | |||| | ||| |||||||| ||||||||||| Sbjct 17113764 ACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAAGACAACCGTTGTATAGCCATTCATC 17113705 Query 22196 AAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTCGGAAC 22255 || | ||||||||| | || ||||| ||||| | || || || | | |||| Sbjct 17113704 AACGGATGCAGCTTCCTAGATCGGGTAAAAGTGCAAACCAATAGCGACATAAGTAGGAAT 17113645 Query 22256 GACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCTCGGAT 22315 | | | || || || || ||||| || || | || || | || || ||||| | || Sbjct 17113644 AATGACACCAGAAATAATATTGTTTCCGTAAAGAAGAGATCTAGAAACAGGTTCACAAAT 17113585 Query 22316 TCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAAACAAGTTGTAGCG-G 22374 ||||| || || || | || | ||| || |||||||||||| | || ||| Sbjct 17113584 ACCATCAATATCTACTAGAGGAACAACAATGAATGCGATAATAAAAACGGAAGTTGCGTT 17113525 Query 22375 CAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGACGGTTATTAGT 22432 ||| ||| | || |||| | || || |||||||| | ||||||||||| | ||| Sbjct 17113524 CAATAAGGTA-GGGATCACTAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGT 17113468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146207722204800