Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq115 150 2e-31 seq47 116 4e-21 seq66 113 5e-20 seq64 111 2e-19 >seq115 Length=22393718 Score = 150 bits (166), Expect = 2e-31 Identities = 227/319 (71%), Gaps = 8/319 (3%) Strand=Plus/Minus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 ||||| |||||||| ||| | || | ||| ||| |||||||| ||||| || Sbjct 2971722 GGTGCTAAGATCCCGAAAGGGTGTTTGCTGGTGGGACCGCCGGGTACGGGGAAGACGCTT 2971663 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAAC 175395 | || |||| | ||||| ||| || || || ||| || ||| |||| | | Sbjct 2971662 TTGGCGAGAGCGGTGGCGGGAGAAGCAGGAGTGCCGTTCTTCTCGTGTGCTGCGTCGGAG 2971603 Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTT--GAAATCG 175453 || |||||| ||||||||||||||||||| |||||| | ||||| ||| ||| || Sbjct 2971602 TTCGTGGAGCTGTTTGTTGGTGTGGGTGCGTCTAGGGTTAGGGATCTGTTTGAGAAGGCG 2971543 Query 175454 CCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAAC 175513 ||||| ||| || ||||| ||||| ||||||||||| || ||||| | |||| Sbjct 2971542 AAATCGAAA--GCACCTTGCATTGTTTTCATAGATGAGATTGACGCTGTGGGTAGGCAAA 2971485 Query 175514 GCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACT 175571 | | ||||| ||| | || | ||||||||||||||| || || |||||||| || || Sbjct 2971484 GAGGAGCTGGCATGGGAGGC--GGAAATGACGAGAGAGAGCAGACTATTAATCAGCTTCT 2971427 Query 175572 CACCGAGATGGATGGCTTT 175590 || || |||||||| ||| Sbjct 2971426 GACGGAAATGGATGGGTTT 2971408 Score = 95.1 bits (104), Expect = 1e-14 Identities = 277/421 (66%), Gaps = 18/421 (4%) Strand=Plus/Plus Query 177565 AACTGCCTCACAGAGTGTGTCTCCCCCGTCGCGACAACATATTCATCAGCCTCTTCTTGT 177624 |||| | ||| | ||||| ||| | || || ||||| || ||||| | || ||||| Sbjct 12979667 AACTCCTCCACTGTGTGTGCTTCCTCTGTTGCCACAACGTAATCATCTGGCTTCTCTTGC 12979726 Query 177625 TGAAGCATGAGCCACATGGCTTCAACATAGTCCTTGGCATGACCCCAGTCTCTGGCAGCG 177684 || | ||| |||||||| || || || || ||| || ||||||||||| | || Sbjct 12979727 TGCAACATCAGCCACATTGCCTCCACGTAATCCCCTGCGAATCCCCAGTCTCTTGACGCC 12979786 Query 177685 TTGAGGTTACCGAGTTCAAGGAACTCTCTCTC---ACCTTTCACAATTTGTTTGACGCCA 177741 | || || || || | || || |||| |||| | || || | | | Sbjct 12979787 TGTAGATTTCCCAGG---AAGAGCTTCCTCTGCAAACCTACCTTGATCCGTCCCAAGGCT 12979843 Query 177742 TCAGTAATCTTCTTTGTGACAAAGTCGGCACCTCGTCTCGGTGATTCGTGGTTGAAGAGG 177801 || |||||| | || || |||| | ||||| | ||||| ||||||||||| ||| Sbjct 12979844 CTTGTTATCTTCCTCGTCACGAAGTTCTCCCCTCGGCGTGGTGACTCGTGGTTGAACAGG 12979903 Query 177802 ATTCCGGAGCAGGCATACATACCATAGGATTCTCGGTAATTTTTGAC---GAGCCAGTGA 177858 |||||| ||||| ||| ||| |||| |||||||||| ||||| | ||| ||| Sbjct 12979904 ATTCCGTTACAGGCGAACAGACCGTAGGCTTCTCGGTAA---TTGACTGTGTACCAATGA 12979960 Query 177859 GCGGCCAATTTGGAGACGCCATAGACGGATCGTGGGTAGAAGGGTGTCTCCTCAGTTTGT 177918 || || | ||||| | | ||| |||| || | ||| || || ||| | ||| Sbjct 12979961 GCCGCGCACTTGGACGCTGCGTAGGGAGATCTGGGATGGAACGGCGTTGTCTCCGATTGG 12980020 Query 177919 GGAGTTTCTCGGACTTTA-CCAAACATCTCCGAAGTTGAGGCTTGGTA-TACACGATACT 177976 |||| | ||| | | || |||||||| |||| | ||| ||||| ||| ||| || Sbjct 12980021 GGAGGT----GGAGTCGATCCGAACATCTCAGAAGATCCGGCCTGGTAGTACTTGATGCT 12980076 Query 177977 T 177977 | Sbjct 12980077 T 12980077 >seq47 Length=18124089 Score = 116 bits (128), Expect = 4e-21 Identities = 294/446 (66%), Gaps = 6/446 (1%) Strand=Plus/Plus Query 175237 GTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGC 175296 ||||| ||| | ||| | || ||||| | | || |||||| ||| || ||| Sbjct 14821626 GTGGAGTTTTTAAAGAAGCCTGAGAGGTTTACTGCGGTTGGTGCTCGGATTCCGAAAGGT 14821685 Query 175297 GCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGT 175356 | |||||| | ||| || ||||| ||||| || || | || |||||| || ||| Sbjct 14821686 GTCCTTCTTGTTGGTCCTCCTGGTACTGGAAAAACACTTTTGGCTAAAGCCATTGCTGGT 14821745 Query 175357 GAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGT 175416 ||| | ||| || ||| | | || | | | ||||| ||||||||||||||| Sbjct 14821746 GAAGCCGGTGTACCTTTCTTTTCGATTTCCGGTTCTGAGTTTGTTGAGATGTTTGTTGGT 14821805 Query 175417 GTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATT 175476 || |||||| ||| || || || || || ||| || || ||| || |||||| Sbjct 14821806 GTTGGTGCCTCAAGAGTCCGTGACCTTTTCAAAAAGGCGAAAGAGAATGCTCCGTGTATT 14821865 Query 175477 GTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGCCA 175533 ||||| | ||||| || || || || || | ||| | | |||| |||| | Sbjct 14821866 GTCTTTGTGGATGAAATAGACGCTGTTGGTAGACAAAGAGGAACTGGAATTGGTGG---A 14821922 Query 175534 GCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGAC 175593 | |||||||| |||||||| || ||||||| || | |||||||||||||| ||||| Sbjct 14821923 GGTAATGACGAAAGAGAACAGACTCTTAATCAGCTCTTAACCGAGATGGATGGTTTTGAA 14821982 Query 175594 AATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCC 175653 | | ||||| || | || |||| || || || | | || || || || ||| Sbjct 14821983 GGTAACACTGGTGTTATCGTAGTTGCTGCAACCAACAGAGCAGACATTCTCGACTCCGCT 14822042 Query 175654 CTCCTTCGCCCGGGTCGTTTTGATCG 175679 | || | || || || |||||||| Sbjct 14822043 TTGCTGAGACCAGGGCGGTTTGATCG 14822068 >seq66 Length=12628956 Score = 113 bits (124), Expect = 5e-20 Identities = 271/410 (66%), Gaps = 0/410 (0%) Strand=Plus/Plus Query 175237 GTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGC 175296 || || ||||| ||| |||||||||||| | | |||||| |||||||| ||| Sbjct 1472285 GTTGAGTTTCTGAAGAAACCCGAGAGATTCACCGCAGTTGGTGCTAAGATCCCGAAAGGT 1472344 Query 175297 GCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGT 175356 | || | ||| || ||||| || || || || | || ||| || || ||| Sbjct 1472345 GTTCTGTTAATCGGTCCTCCTGGTACCGGTAAAACTCTTTTGGCAAAAGCTATTGCTGGT 1472404 Query 175357 GAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGT 175416 ||| | ||| || ||| || ||||| | | ||||| ||||||||||| ||| Sbjct 1472405 GAAGCTGGTGTGCCTTTCTTCTCCATCTCTGGTTCTGAGTTTGTTGAGATGTTTGTCGGT 1472464 Query 175417 GTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATT 175476 || |||||| ||| || || ||||| || | | ||| ||||| || || ||| Sbjct 1472465 GTTGGTGCCTCAAGAGTCCGTGATCTTTTCAAGAAAGCCAAAGAAAACGCTCCCTGCATT 1472524 Query 175477 GTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCA 175536 ||||| ||||||| || ||||| || || | |||| | | | ||| | || Sbjct 1472525 GTCTTTGTTGATGAAATCGATGCTGTTGGTAGGCAAAGAGGAACCGGTATTGGTGGAGGT 1472584 Query 175537 AATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAAT 175596 || || || |||||||| || | ||||| || | || ||||||||||| ||||| | Sbjct 1472585 AACGATGAAAGAGAACAGACTCTCAATCAGCTCTTGACTGAGATGGATGGATTTGAAGGT 1472644 Query 175597 GAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 | || || || | || |||| || || ||| | | ||||| ||||| Sbjct 1472645 AACACCGGTGTTATTGTAGTTGCTGCAACCAATAGAGCTGATATTCTTGA 1472694 >seq64 Length=9524166 Score = 111 bits (122), Expect = 2e-19 Identities = 154/215 (72%), Gaps = 3/215 (1%) Strand=Plus/Plus Query 64996 GCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC 65055 |||||| | || | || || | | |||||| || | ||||| |||| |||| | ||| Sbjct 404010 GCCATCGAGACCATCCCTTGCGTCGCGAAGAAAGCCCAGTGGGCGATGACATGGATCGAC 404069 Query 65056 ACAAAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTC 65115 | |||| ||||||||||||| | | || || || || || || ||||||||| Sbjct 404070 GGA---TCTCAGACCTTCGCCGAGCGTATCGTGGCTTTCGCCTGCGTCGAAGGTATCTTC 404126 Query 65116 TTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTA 65175 |||||||| |||||| | |||| ||| | |||||||| ||||||||||| || || Sbjct 404127 TTCTCCGGTAGTTTCTGCTCGATTTTCTGGCTTAAGAAGCGCGGTCTCATGCCCGGATTA 404186 Query 65176 TGCTTCTCAAATGAACTTATTTCCCGAGATGAGGG 65210 |||||| ||||| | || || ||||| || || Sbjct 404187 ACCTTCTCCAATGAGTTGATCTCGCGAGACGAAGG 404221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596568406860800