Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq153 529 2e-145 seq80 403 2e-107 seq90 105 8e-18 >seq153 Length=83015 Score = 529 bits (586), Expect = 2e-145 Identities = 714/990 (72%), Gaps = 6/990 (1%) Strand=Plus/Plus Query 7878 AGTCTCAGCAGATGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTC 7937 || |||| ||| |||| ||||| ||||||||||| ||||| | ||||||||||||||| Sbjct 51477 AGCCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 51536 Query 7938 CATACCTAAGTTTGCTCTGTT--TAATACGTCACCCCATGTAGGAATGATTTTACCATTA 7995 |||||| | ||| || | ||| ||||| ||| |||| ||| ||| | || | | Sbjct 51537 CATACCAAGGTTAGCACGGTTAATAATA--TCAGCCCAAGTATTAATAACACGTCCTTGA 51594 Query 7996 ACATCAACAACTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATA 8055 |||||| ||||||||||| || || || || || ||||| || ||||| |||| |||| Sbjct 51595 CTATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATA 51654 Query 8056 CCCATAGAAGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTT 8115 || | || ||| ||||||| || ||| || || | | || | |||||| || | | Sbjct 51655 CCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAA 51714 Query 8116 CTACTGTTGTT-AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGC 8174 | |||||| |||| | ||||| |||||||| |||| ||||| || || |||||||| Sbjct 51715 CGGGAGTTGTTGAAACTA-GCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGC 51773 Query 8175 AACAATATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTC 8234 ||||| || || || |||||||||||||| || | ||||| | || ||| || | Sbjct 51774 TACAATGTTGTAAGTTTCTTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATT 51833 Query 8235 TTCAGTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAG 8294 ||| || || || ||||| | | ||| || || || ||||| ||||||||||| || || Sbjct 51834 TTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAG 51893 Query 8295 TGATCCACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATG 8354 || || ||||| | ||| ||||| ||| ||| || || || |||||||||||||| || Sbjct 51894 GGAACCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTG 51953 Query 8355 CTCTGCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATC 8414 ||| || |||||||| | ||| ||||| || |||||||| || ||||||||||| ||||| Sbjct 51954 CTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATC 52013 Query 8415 AGAGAATGAACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGG 8474 ||| || || ||||||| ||| || | ||||| || || |||||| | || || Sbjct 52014 AGAAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGG 52073 Query 8475 AGCACTATATGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTG 8534 ||| |||||| ||| ||||| || | |||||| | ||| | | ||||||| Sbjct 52074 AGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTC 52133 Query 8535 TCTACCCATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACC 8594 | |||||| ||| || | |||| | ||||| | | || | | ||| ||||| Sbjct 52134 ACGACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACC 52193 Query 8595 TCCGTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCC 8654 ||||| || | ||| ||||| | | ||||||||||| || || || ||||| || || Sbjct 52194 ACCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGGTAAAAGTGCAAACC 52253 Query 8655 AATAGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGA 8714 ||||||| |||| |||| | |||||||| || || |||||||| || | | || Sbjct 52254 AATAGCGGCAGAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCGTAAAGAAGAGA 52313 Query 8715 ACCTGCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCAC 8774 || | |||||||||||||||||| || ||||| || || ||||||||||| ||||| | Sbjct 52314 TCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGAT 52373 Query 8775 GATAAAGCAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGAC 8834 ||||| | || || | || ||| ||| ||||| | ||| |||||||| || | Sbjct 52374 AATAAAAACGGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAAT 52433 Query 8835 ATAAAGTCTGTTGTTTGTACTTGTAACCCA 8864 ||||| | ||| | || || || | ||| Sbjct 52434 GTAAAGACGGTTTTCAGTGCTGGTTATCCA 52463 >seq80 Length=21647715 Score = 403 bits (446), Expect = 2e-107 Identities = 664/951 (70%), Gaps = 14/951 (1%) Strand=Plus/Minus Query 7903 GGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTTGCTCTGTT--TA 7960 ||||||||||| ||||| | ||||||||||||||||||| | | || || | ||| || Sbjct 17114417 GGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATAACAAGATTAGCACGGTTAATA 17114358 Query 7961 ATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGATTGGTTAAAGT 8020 ||| ||| |||| ||| ||| | | | | |||||| | |||| |||| || Sbjct 17114357 ATA--TCAGCCCAAGTATTAATAACACGTTCTTGACTATCAACTATTGATGGGTTGAAAC 17114300 Query 8021 TAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAACCAAACACATA 8080 | || || || ||||| || ||||| |||| |||||| | || ||| ||||||| | || Sbjct 17114299 TGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTAAACCAAATAGCTA 17114240 Query 8081 CAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTT-AAACGATGCATAC 8139 | || || | | || | |||||| || | | | |||||| |||| | ||||| Sbjct 17114239 CTACCGGCCAAGCTGCTAAGAAGAAATGTAAAGAACGGGAGTTGTTGAAACTA-GCATAT 17114181 Query 8140 TGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTCTCTTCTTCT 8199 |||||||| |||| ||||| || | |||||| | ||||| || || || | ||||||| Sbjct 17114180 TGGAAGATCAATCGGCCAAAATAGTCGTGAGCAACTACAATGTTGTAAGTTTTTTCTTCT 17114121 Query 8200 TGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCTGATTAGAGAA 8259 ||||| || | ||||| | || ||| || | ||| || || || ||||| | | | Sbjct 17114120 TGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTA 17114061 Query 8260 GATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACATACCTGCTACC 8319 || || || |||||||| ||||||||||| || || || || ||||| | ||| ||||| Sbjct 17114060 GAAGTTACCAAAGAACCATGCATAGCACTAAATAGGGAACCGCCGAATACACCAGCTACA 17114001 Query 8320 CCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAACATGAAG 8379 ||| ||| || || || |||||||||||||| ||||| || | |||||| | ||| ||| Sbjct 17114000 CCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTAGAATACAATCATAAAG 17113941 Query 8380 TTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGACCAAATGGA 8439 || || |||||||| || | ||||||||| |||||| | || || |||| || ||| Sbjct 17113940 TTGAAAGTACCAGAGATTCATAGAGGCATACCATCATAAAAACTTCCTTGACAAATTGGG 17113881 Query 8440 TATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTACACAGATCCAT 8499 || ||||| || || |||||| | |||||||| |||||| ||| | ||||| Sbjct 17113880 TAGTTCAAGAAAACAGCAGTAGCAGCTGCAACTGGAGCTGAATATGCAACAAAAATCCAA 17113821 Query 8500 GGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAAGCAGAAATTCCA 8559 || | || ||| | | | | | ||||||| | |||||| ||| || | ||| Sbjct 17113820 GGACGCACACCCAGACAGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCA 17113761 Query 8560 ATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACCACTCATCTAAT 8619 | | ||||| | | || | | ||| ||| ||||| || | ||| ||||| | Sbjct 17113760 AGTAAAAAGTGTAGAACAATTAGTTCATAAAGACAACCGTTGTATAGCCATTCATCAACG 17113701 Query 8620 GTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGATGGAACGACA 8679 | ||||||||| | || || || ||||| || ||||||||| ||| |||| | Sbjct 17113700 GATGCAGCTTCCTAGATCGGGTAAAAGTGCAAACCAATAGCGACATAAGTAGGAATAATG 17113641 Query 8680 GCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTCACGAATACCG 8739 ||||||| || || |||||||| || | | || | | ||||||||||| |||||| Sbjct 17113640 ACACCAGAAATAATATTGTTTCCGTAAAGAAGAGATCTAGAAACAGGTTCACAAATACCA 17113581 Query 8740 TCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAA---GCAAGTAGCAGCAGCT 8796 || ||||| || | ||| || |||| ||||| | ||||| | |||| || | | Sbjct 17113580 TCAATATCTACTAGAGGAACAACAATGAATGCGATAATAAAAACGGAAGTTGC----GTT 17113525 Query 8797 -AACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAGTCTGTT 8846 || ||| ||| |||| || ||| |||||||| || | ||||| | ||| Sbjct 17113524 CAATAAGGTAGGGATCACTAAAACACCAAACCATCCAATGTAAAGACGGTT 17113474 >seq90 Length=4948294 Score = 105 bits (116), Expect = 8e-18 Identities = 136/182 (75%), Gaps = 8/182 (4%) Strand=Plus/Minus Query 7897 TCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTTGCTCTG 7956 |||| |||||||| || ||||| | || |||||||||||||||||| | ||| || | | Sbjct 3477193 TCTAGAGGGAAGTTTTGAGCATTACCTTAATGCATAACTTCCATACCAAGGTTAGCAC-G 3477135 Query 7957 TTTAATACG-TCACCCCATGTAGGAATGATTTTAC--CATTAAC-ATCAACAACTGATTG 8012 |||||| ||| |||| ||| ||| | || |||| || |||||| |||||||| Sbjct 3477134 ATTAATAATATCAACCCAAGTATTAATAAC---ACGTCATTGACTATCAACTACTGATTG 3477078 Query 8013 GTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAACCA 8072 ||| || ||||| || || || || || || | |||| |||||| | || ||| ||||| Sbjct 3477077 GTTGAAATTAAAACCATTTAGATTGAAAGCTACAGTGCTAATACCTAAAGCAGTAAACCA 3477018 Query 8073 AA 8074 || Sbjct 3477017 AA 3477016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615861168275200