Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq153 538 1e-148 seq80 417 2e-112 >seq153 Length=83015 Score = 538 bits (596), Expect = 1e-148 Identities = 718/995 (72%), Gaps = 2/995 (0%) Strand=Plus/Minus Query 41234 TTTTGTTCCTGGGTCACCTCTACTAATAACCGTCTTTATGTAGGATGGTTCGGAGTCCTT 41293 || ||| |||| | ||| ||| | ||||||||||| | |||||||| || || | Sbjct 52472 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 52413 Query 41294 ATGATTCCGTGCCTCCTTG-CCGCTACAACTTGTTTTATTATCGCCTTTGTTGGCGCACC 41352 ||||| || | ||| ||| |||| || | |||||||||||| || ||| || || Sbjct 52412 ATGATCCC-TACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCC 52354 Query 41353 ACCTGTTGACATCGATGGAATCCGAGAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAA 41412 || || || || ||||| || || ||||| || |||| || || | || || ||||| Sbjct 52353 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAA 52294 Query 41413 CATCATATCAGGAGCCGTCGTTCCGAGCAGTAATGCCATCGGACTACACTTCTACCCAAT 41472 || || || || ||| | |||| | | || || || | ||||| ||||| || Sbjct 52293 TATTATTTCTGGTGCCATTATTCCTACTTCTGCCGCTATTGGTTTGCACTTTTACCCGAT 52234 Query 41473 TTGGGAAGCTGCTACACTTGATGAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGT 41532 ||||||||||| | ||||||||||||| |||||||| ||||| | |||| | || Sbjct 52233 CTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGT 52174 Query 41533 ATTCCACTTCCTCATTGGCGTCTTTGCTTACATGGGACGAGAGTGGGAACTTAGCTATCG 41592 | ||||| | |||| || | ||| ||||| || |||||||||||||| | || Sbjct 52173 TCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 52114 Query 41593 ACTAGGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGC 41652 || || ||| | || ||||| |||||| || || |||||||| || ||||| ||||| Sbjct 52113 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 52054 Query 41653 TGTGTTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGAT 41712 ||| ||| | | || || |||| || || ||||||||||| |||||| | || || Sbjct 52053 TGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 51994 Query 41713 ATCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATCC 41772 || || || ||||||| ||| | || ||||||||||||||||| ||||||||||| || Sbjct 51993 CTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCC 51934 Query 41773 TTTTCACATGCTGGGTGTGGCCGGCGTATTTGGTGGGAGTTTGTTCTCTGCTATGCACGG 41832 ||||||||| | ||||| || || ||||| || || | || ||||||||| || Sbjct 51933 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTTAGTGCTATGCATGG 51874 Query 41833 TAGCCTGGTCACGTCGTCACTCATTCGTGAGACGACTGAAGAGGTTTCACAGAACTATGG 41892 | | |||| || || | || | || || || ||| | | || || | || Sbjct 51873 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 51814 Query 41893 TTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGG 41952 ||||| || |||||||| ||||| |||||||| ||||| ||||||||||| |||||||| Sbjct 51813 TTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGG 51754 Query 41953 TCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGC 42012 || | ||||||||||||||||| || || || |||||| | | |||||||| | || Sbjct 51753 CCGATTGATCTTCCAATATGCTAGTTTCAACAACTCCCGTTCTTTACATTTCTTCTTAGC 51694 Query 42013 TGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAA 42072 || ||||| || ||||||||||||||| |||| | || | || ||||||||||| Sbjct 51693 GGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAA 51634 Query 42073 CTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGACAGGTGATCAACAC 42132 | | ||||||||||| || |||||||| | | | | | | |||| || || || || Sbjct 51633 CCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATAC 51574 Query 42133 CTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCATGAGCGGAACGC 42192 |||||||| ||| |||||||||| |||||||| | || || |||||||| || || || Sbjct 51573 TTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 51514 Query 42193 ACACAACTTCCCGCTTGACCTTGCATCCGTGGAGG 42227 ||||||||||| || ||||| || | || |||| Sbjct 51513 TCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGG 51479 >seq80 Length=21647715 Score = 417 bits (462), Expect = 2e-112 Identities = 669/958 (70%), Gaps = 2/958 (0%) Strand=Plus/Plus Query 41255 ACTAATAACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTGC- 41313 ||| | ||||||||||| | |||||||| || || | |||| || | ||| ||| Sbjct 17113468 ACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTAGTGATCCC-TACCTTATTGAA 17113526 Query 41314 CGCTACAACTTGTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAAT 41373 ||| || | |||||||||||| || ||| | || | || || || ||||| || Sbjct 17113527 CGCAACTTCCGTTTTTATTATCGCATTCATTGTTGTTCCTCTAGTAGATATTGATGGTAT 17113586 Query 41374 CCGAGAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGT 41433 | ||||| || || | || || | || || ||||| || || || || | | | | Sbjct 17113587 TTGTGAACCTGTTTCTAGATCTCTTCTTTACGGAAACAATATTATTTCTGGTGTCATTAT 17113646 Query 41434 TCCGAGCAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGA 41493 ||| | | || || || | ||||| ||||| || | ||||||||| | |||| Sbjct 17113647 TCCTACTTATGTCGCTATTGGTTTGCACTTTTACCCGATCTAGGAAGCTGCATCCGTTGA 17113706 Query 41494 TGAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGT 41553 ||||||||| |||||||| ||| | |||| | || | ||||| | |||| || Sbjct 17113707 TGAATGGCTATACAACGGTTGTCTTTATGAACTAATTGTTCTACACTTTTTACTTGGTGT 17113766 Query 41554 CTTTGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGAT 41613 | ||| ||||| || |||||||||||||| | | || || || | || ||||| Sbjct 17113767 AGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCTGTCTGGGTGTGCGTCCTTGGAT 17113826 Query 41614 CTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTT 41673 |||||||| || || ||||| || || ||||| |||||||| ||| | || || | Sbjct 17113827 TTTTGTTGCATATTCAGCTCCAGTTGCAGCTGCTACTGCTGTTTTCTTGAACTACCCAAT 17113886 Query 41674 TGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACAT 41733 | | || || ||||| ||||| |||||| | | || || || || ||||||| || Sbjct 17113887 TTGTCAAGGAAGTTTTTATGATGGTATGCCTCTATGAATCTCTGGTACTTTCAACTTTAT 17113946 Query 41734 GCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGC 41793 | | || ||| ||||||||||||| ||||||||||| || ||||||||| | ||||| || Sbjct 17113947 GATTGTATTCTAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGC 17114006 Query 41794 CGGCGTATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACT 41853 || ||||| || || | || ||||||||| ||| |||| || || | Sbjct 17114007 TGGTGTATTCGGCGGTTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACTTCTAGTTT 17114066 Query 41854 CATTCGTGAGACGACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGA 41913 || | || || || ||| | | || || | ||||||| || |||||||| || Sbjct 17114067 GATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGA 17114126 Query 41914 AGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGC 41973 | | |||||||| ||||| | |||||||| ||||||||| || | |||||||||||||| Sbjct 17114127 AAAAACTTACAACATTGTAGTTGCTCACGACTATTTTGGCCGATTGATCTTCCAATATGC 17114186 Query 41974 TAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTAT 42033 ||| || || || |||||| | | |||||||| | || || ||||| || |||| ||| Sbjct 17114187 TAGTTTCAACAACTCCCGTTCTTTACATTTCTTCTTAGCAGCTTGGCCGGTAGTAGCTAT 17114246 Query 42034 TTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGGTTTCAACTTTAA 42093 ||||||| |||| | || | || |||||||||||| | |||||||||| || || Sbjct 17114247 TTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAGTTTCAA 17114306 Query 42094 CCAATCTCTGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCTGACATTCTTAACCG 42153 || ||| | | | | | | | || || || || || |||||||| ||| ||||||| Sbjct 17114307 CCCATCAATAGTTGATAGTCAAGAACGTGTTATTAATACTTGGGCTGATATTATTAACCG 17114366 Query 42154 TGCCAACCTTGGCTTTGAGGTGATGCATGAGCGGAACGCACACAACTTCCCGCTTGAC 42211 ||| || |||| | || || |||||||| || || || ||||||||||| ||| || Sbjct 17114367 TGCTAATCTTGTTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTTTAC 17114424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146214122192640