Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq153 576 4e-160 seq80 453 3e-123 seq90 120 9e-23 >seq153 Length=83015 Score = 576 bits (638), Expect = 4e-160 Identities = 734/1005 (73%), Gaps = 4/1005 (0%) Strand=Plus/Minus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || ||||||||| | || ||| | ||||||||||| |||| |||||| Sbjct 52481 TGGGGTCGCTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTT 52422 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCG-CTGCTACCACCTGTTTTATTGTCGCTTTCAT 42398 ||||| ||||||| |||| || | | | || || || ||||||| |||| ||||| Sbjct 52421 GGTGTTTTGATGAT-CCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCAT 52363 Query 42399 TGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTA 42458 |||||| ||||| ||||| |||||||| |||||||||||||| ||||| |||||||| || Sbjct 52362 TGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTA 52303 Query 42459 TGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTT 42518 || ||||| || || ||||||||| | | |||| | ||| ||||| | || || Sbjct 52302 CGGAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTGCCGCTATTGGTTTGCACTT 52243 Query 42519 GTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCA 42578 || ||||||||||||| || |||| |||||||| ||||| || || |||||| | Sbjct 52242 TTACCCGATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGA 52183 Query 42579 GCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAACT 42638 || | || | ||||| | | ||| | | ||| |||| || || |||||||| Sbjct 52182 ACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACT 52123 Query 42639 TTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTGC 42698 | | ||| || || ||| | || ||||| |||||| || || || ||||| || || Sbjct 52122 TAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGC 52063 Query 42699 AGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCC 42758 || ||||| || ||| | |||| ||| |||| ||||| |||||| ||||| ||||| Sbjct 52062 TGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCC 52003 Query 42759 TCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCT 42818 ||| || || || ||||| |||||||| ||| | || ||||||||||| || |||||||| Sbjct 52002 TCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCT 51943 Query 42819 TATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGC 42878 |||||| || || || ||| | ||||| || || ||||| || || || | || || Sbjct 51942 TATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTTAGTGC 51883 Query 42879 TATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCCA 42938 |||||||||| | || || ||| | | | | ||||| || ||||| ||| Sbjct 51882 TATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGC 51823 Query 42939 AAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGG 42998 ||| | || |||| ||||||||||| || || ||||| |||||||| || || || || Sbjct 51822 TAATGAAGGTTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGG 51763 Query 42999 TTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCACT 43057 ||| ||||| || | |||||||||||||| | |||| || || || ||||| || | Sbjct 51762 TTATTTTGGCCGATTGATCTTCCAATATGC-TAGTTTCAACAACTCCCGTTCTTTACATT 51704 Query 43058 TCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTA 43117 |||| | || |||||||| || || || |||||||| ||| || | || | || |||| Sbjct 51703 TCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACTA 51644 Query 43118 TGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCATG 43177 |||| || ||| | |||||||| || || ||||||||| | ||||||| ||| | || Sbjct 51643 TGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTG 51584 Query 43178 TCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCACG 43237 | || |||||||||||||||| | || ||||| |||||||| | || || ||||| | Sbjct 51583 TTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATG 51524 Query 43238 AGCGGAATGCACATAACTTCCCGCTTGATCTTGCATCCGTGGAGG 43282 | || ||||| || |||||||| || || || || | || |||| Sbjct 51523 AACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGG 51479 >seq80 Length=21647715 Score = 453 bits (502), Expect = 3e-123 Identities = 678/957 (71%), Gaps = 4/957 (0%) Strand=Plus/Plus Query 42309 GACTAACAACCGTCTTTATGTTGGGTGGTTTGGTGTGCTGATGATTCCCTGTCTGCTCGC 42368 |||| | ||||||||||| |||| ||||||||||| | |||| |||| || | | Sbjct 17113467 GACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTAGTGAT-CCCTACCTTATTGA 17113525 Query 42369 T-GCTACCACCTGTTTTATTGTCGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCA 42427 || || || ||||||| |||| ||||||| || |||| ||||| |||||||| | Sbjct 17113526 ACGCAACTTCCGTTTTTATTATCGCATTCATTGTTGTTCCTCTAGTAGATATTGATGGTA 17113585 Query 42428 TTCGTGAACCTGTCTCTGGCTCTCTTCTGTATGGCAACAACATCATCTCTGGTGCCGTCG 42487 || |||||||||| ||| | |||||||| || || ||||| || || ||||||| | | Sbjct 17113586 TTTGTGAACCTGTTTCTAGATCTCTTCTTTACGGAAACAATATTATTTCTGGTGTCATTA 17113645 Query 42488 TGCCTAGCAGTAACGCAATTGGACTACATTTGTATTCGATCTGGGAAGCCAATACCCTTG 42547 | |||| | ||| ||||| | || || || |||||| |||||| || ||| Sbjct 17113646 TTCCTACTTATGTCGCTATTGGTTTGCACTTTTACCCGATCTAGGAAGCTGCATCCGTTG 17113705 Query 42548 ACGAATGGCTCTACAATGGCGGACCTTATCAGCTCGTCGTGTTCCACTTCCTTATCGGTA 42607 | |||||||| ||||| || | | |||| | || | || | ||||| | | ||| Sbjct 17113706 ATGAATGGCTATACAACGGTTGTCTTTATGAACTAATTGTTCTACACTTTTTACTTGGTG 17113765 Query 42608 TCTTCTCTTACTTGGGACGCGAATGGGAACTTTCGTACCGACTTGGGATGAGGCCCTGGA 42667 | | ||| |||| || || ||||||||| | | | || || || | || |||| Sbjct 17113766 TAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCTGTCTGGGTGTGCGTCCTTGGA 17113825 Query 42668 TCTTTGTTGCTTACTCTGCCCCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCAT 42727 | |||||||| || || || || || || || || ||||| || ||| | ||| ||| Sbjct 17113826 TTTTTGTTGCATATTCAGCTCCAGTTGCAGCTGCTACTGCTGTTTTCTTGAACTACCCAA 17113885 Query 42728 TTGGGCAAGGTTCTTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCA 42787 || | ||||| ||||| ||||| |||||||| | || || ||||| |||||||| | Sbjct 17113886 TTTGTCAAGGAAGTTTTTATGATGGTATGCCTCTATGAATCTCTGGTACTTTCAACTTTA 17113945 Query 42788 TGTTGGTCTTCCAGGCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTG 42847 || | || ||| ||||||| || |||||||||||||| || || || ||| | ||||| | Sbjct 17113946 TGATTGTATTCTAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAG 17114005 Query 42848 CCGGCGTATTTGGTGGGTCGTTGTTCTCAGCTATGCATGGTAGTCTTGTCACCTCTTCTC 42907 | || ||||| || || || | || |||||||||||| | | || || ||| | Sbjct 17114006 CTGGTGTATTCGGCGGTTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACTTCTAGTT 17114065 Query 42908 TTGTGCGTGAAACGACTGAAAACGAAAGCCAAAATTATGGCTACAAGTTCGGTCAAGAGG 42967 | | | ||||| || ||||| ||| ||| | || |||| ||||||||||| | Sbjct 17114066 TGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAG 17114125 Query 42968 AGGAGACTTATAACATTGTTGCAGCGCATGGTTACTTTGGACGGCTTATCTTCCAATATG 43027 | | ||||| |||||||| | || || | || ||||| || | ||||||||||||| Sbjct 17114126 AAAAAACTTACAACATTGTAGTTGCTCACGACTATTTTGGCCGATTGATCTTCCAATATG 17114185 Query 43028 CGTCGTTT-AATAATAGTCGCTCTTTGCACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGG 43086 | | |||| || || || ||||| || ||||| | || |||||||| || || | Sbjct 17114186 C-TAGTTTCAACAACTCCCGTTCTTTACATTTCTTCTTAGCAGCTTGGCCGGTAGTAGCT 17114244 Query 43087 ATTTGGTTCACTTCTCTTGGCGTCAGTACTATGGCGTTTAACTTGAATGGTTTTAACTTT 43146 |||||||| ||| || | || | || |||||||| || ||| | |||||||| | || Sbjct 17114245 ATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAGTTTC 17114304 Query 43147 AACCAATCACTTGTTGATAATCAGAATCATGTCATCCCTACTTGGGCTGATATTTTGAAT 43206 |||| |||| | ||||||| ||| | | ||| || |||||||||||||||| | || Sbjct 17114305 AACCCATCAATAGTTGATAGTCAAGAACGTGTTATTAATACTTGGGCTGATATTATTAAC 17114364 Query 43207 CGTGCCAACCTTGGCTTTGAGGTGATGCACGAGCGGAATGCACATAACTTCCCGCTT 43263 ||||| || |||| | || || ||||| || || ||||| || |||||||| ||| Sbjct 17114365 CGTGCTAATCTTGTTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTT 17114421 >seq90 Length=4948294 Score = 120 bits (132), Expect = 9e-23 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 43050 TTTGCACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGT 43109 ||| || ||||| | || |||||||| || | |||||||| ||| || | || | Sbjct 3476978 TTTACATTTCTTCTTAGCGGCTTGGCCGGTAATACATATTTGGTTTACTGCTTTAGGTAT 3477037 Query 43110 CAGTACTATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCA 43169 || ||| | || || || | ||||||||||| || ||||||||| | ||||||| ||| Sbjct 3477038 TAGCACTGTAGCTTTCAATCTAAATGGTTTTAATTTCAACCAATCAGTAGTTGATAGTCA 3477097 Query 43170 GAATCATGTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGT 43229 | ||| || |||||||| ||||||| | |||||||| |||||||| | || || Sbjct 3477098 ATGACGTGTTATTAATACTTGGGTTGATATTATTAATCGTGCTAACCTTGGTATGGAAGT 3477157 Query 43230 GATGCACGAGCGGAATGCACATAACTTCCCGCTTGATCT 43268 ||||| | | ||||| || |||||||| || || || Sbjct 3477158 TATGCATTAAGGTAATGCTCAAAACTTCCCTCTAGAACT 3477196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143532527287680