Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq153 506 6e-139 seq80 396 8e-106 seq90 111 5e-20 >seq153 Length=83015 Score = 506 bits (560), Expect = 6e-139 Identities = 702/983 (71%), Gaps = 0/983 (0%) Strand=Plus/Plus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || ||||| ||||||||||| || ||||||||||| | || |||||| Sbjct 51490 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 51549 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 || ||||| | | ||||||||| ||| || | ||| | | ||| |||||||| Sbjct 51550 GCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTATCAACTACTGAT 51609 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056 ||||| || || |||||||||||||| || ||||| |||| ||||| | || || | | Sbjct 51610 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTAAAC 51669 Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAA 26116 || || || || |||||||||| || | |||||||| | ||||||| ||| || ||| Sbjct 51670 CAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGGGAGTTGTTGAAA 51729 Query 26117 CTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTC 26176 || ||||| || || || |||| ||||| || ||||| ||||| ||||| || || || Sbjct 51730 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACAATGTTGTAAGTT 51789 Query 26177 TCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCA 26236 ||||| ||||| || || | || || | ||| || | | ||||| ||||| Sbjct 51790 TCTTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 51849 Query 26237 ATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACC 26296 || | ||||| ||||| || ||||||||| || || | || ||||| || Sbjct 51850 ATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAACCGCCGAATACA 51909 Query 26297 CCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACG 26356 ||||| ||||| ||| || ||||||||||| || || || || || || |||||||| Sbjct 51910 CCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACA 51969 Query 26357 AACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGT 26416 | ||||||||| |||||||||||||| || |||||||| |||||| |||||| ||||| Sbjct 51970 ATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGA 52029 Query 26417 CCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACA 26476 || | || || | ||||| || || ||| || | | || |||| |||||||||| Sbjct 52030 CCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACA 52089 Query 26477 AATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATGCT 26536 ||||| || | ||| || || | | || |||||||||| | || ||| Sbjct 52090 GCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAA 52149 Query 26537 GCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCAC 26596 ||||| || | ||| ||||| | | ||| |||| ||| || || || ||||||||||| Sbjct 52150 GCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATAGCCAT 52209 Query 26597 TCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAG 26656 || || | | |||||||||||||||||||||| || | || || ||| ||| | Sbjct 52210 TCATCAACGGATGCAGCTTCCCAGATCGGGTAAAAGTGCAAACCAATAGCGGCAGAAGTA 52269 Query 26657 GGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCA 26716 || | | || || || || |||||||||||||| | | || || ||||| || ||| Sbjct 52270 GGAATAATGGCACCAGAAATAATATTGTTTCCGTAAAGAAGAGATCCAGAAACAGGTTCA 52329 Query 26717 CGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAAACATGTAGTG 26776 || || ||||| |||||||| || || || || ||||| || | |||||| | ||| Sbjct 52330 CGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAATAAAAACGGAAGTT 52389 Query 26777 GCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCTCA 26836 || | | |||| || ||||| | || || |||||||| | || |||||||| ||| Sbjct 52390 GCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCA 52449 Query 26837 GTACTTGTAACCCACTCACAAAA 26859 || || || | ||| | ||| || Sbjct 52450 GTGCTGGTTATCCAGTTACAGAA 52472 >seq80 Length=21647715 Score = 396 bits (438), Expect = 8e-106 Identities = 666/960 (69%), Gaps = 4/960 (0%) Strand=Plus/Minus Query 25881 AGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTAGCTC 25940 ||| ||| || ||||| ||||||||||| || ||||||||||| | | || ||||| | Sbjct 17114425 AGTAAAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATAACAAGATTAGCAC 17114366 Query 25941 GGTTTAATACATCAGCCCATGTAGGTATTAT-CTTTCCATTAAC-ATCTACTACTGACTG 25998 |||| | | ||||||||| ||| || | | ||| || || ||| |||| ||| | Sbjct 17114365 GGTTAATAATATCAGCCCAAGTATTAATAACACGTTC--TTGACTATCAACTATTGATGG 17114308 Query 25999 GTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGCCA 26058 ||| || | |||||||||||||| || ||||| |||| ||||| | || || | ||| Sbjct 17114307 GTTGAAACTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTAAACCA 17114248 Query 26059 TATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAACT 26118 || | || |||||||||| || | |||||||| | ||||||| ||| || ||||| Sbjct 17114247 AATAGCTACTACCGGCCAAGCTGCTAAGAAGAAATGTAAAGAACGGGAGTTGTTGAAACT 17114188 Query 26119 CGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTCTC 26178 ||||| || || || |||| ||||| || |||| ||| | ||||| || || || | Sbjct 17114187 AGCATATTGGAAGATCAATCGGCCAAAATAGTCGTGAGCAACTACAATGTTGTAAGTTTT 17114128 Query 26179 TTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCAAT 26238 ||| ||||| || || | || || | ||| || | | ||||| ||||| || Sbjct 17114127 TTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGAT 17114068 Query 26239 AAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACCCC 26298 | ||||| |||||| || ||||||||| || || | || ||||| || || Sbjct 17114067 CAAACTAGAAGTTACCAAAGAACCATGCATAGCACTAAATAGGGAACCGCCGAATACACC 17114008 Query 26299 AGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAA 26358 ||| ||||| ||| || ||||||||||| || || || || || || | |||||| | Sbjct 17114007 AGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTAGAATACAAT 17113948 Query 26359 CATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCC 26418 ||||||||| |||||||||||||| | |||||||| |||||| |||||| ||||| | Sbjct 17113947 CATAAAGTTGAAAGTACCAGAGATTCATAGAGGCATACCATCATAAAAACTTCCTTGACA 17113888 Query 26419 GAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACAAA 26478 | || || ||||| || || ||| || | | ||| |||| |||||||||||| Sbjct 17113887 AATTGGGTAGTTCAAGAAAACAGCAGTAGCAGCTGCAACTGGAGCTGAATATGCAACAAA 17113828 Query 26479 TATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATGCTGC 26538 ||||| || | || || || | | || |||||||||| | || ||| || Sbjct 17113827 AATCCAAGGACGCACACCCAGACAGAAACTAAGTTCCCACTCACGACCCATATAACAAGC 17113768 Query 26539 TACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCACTC 26598 ||| || | ||| ||||| | | ||| |||| ||| | | || ||||||||||| || Sbjct 17113767 TACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAAGACAACCGTTGTATAGCCATTC 17113708 Query 26599 GTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAGGG 26658 || | | |||||||| ||||||||||||| || | || || ||| | | | || Sbjct 17113707 ATCAACGGATGCAGCTTCCTAGATCGGGTAAAAGTGCAAACCAATAGCGACATAAGTAGG 17113648 Query 26659 GACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCACG 26718 | | | || || || |||||||||||||| | | || | ||||| || |||| Sbjct 17113647 AATAATGACACCAGAAATAATATTGTTTCCGTAAAGAAGAGATCTAGAAACAGGTTCACA 17113588 Query 26719 TATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAAACATGTAGTGGC 26778 || ||||| |||||||| | || | | ||||| || | |||||| | ||| || Sbjct 17113587 AATACCATCAATATCTACTAGAGGAACAACAATGAATGCGATAATAAAAACGGAAGTTGC 17113528 Query 26779 TGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCTCAGT 26838 | |||| || |||| | || || |||||||| | || |||||||| ||||| Sbjct 17113527 GTTCAATAAGGTAGGGATCACTAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGT 17113468 >seq90 Length=4948294 Score = 111 bits (122), Expect = 5e-20 Identities = 160/223 (72%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 25883 TCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTAGCTCGG 25942 || || || ||||| |||||||||| | ||||||||||| | || |||||||| || Sbjct 3477193 TCTAGAGGGAAGTTTTGAGCATTACCTTAATGCATAACTTCCATACCAAGGTTAGCACGA 3477134 Query 25943 TTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAAC-ATCTACTACTGACTGGTT 26001 || | | |||| |||| ||| || || | |||| || ||| |||||||| ||||| Sbjct 3477133 TTAATAATATCAACCCAAGTAT-TAATAACACGTCATTGACTATCAACTACTGATTGGTT 3477075 Query 26002 AAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGCCATAT 26061 || |||||||||||||| || || || | |||| ||||| | || || | ||| || Sbjct 3477074 GAAATTAAAACCATTTAGATTGAAAGCTACAGTGCTAATACCTAAAGCAGTAAACCAAAT 3477015 Query 26062 GCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGG 26104 | |||||||||| || | |||||||| | | ||||| Sbjct 3477014 ATGTATTACCGGCCAAGCCGCTAAGAAGAAATGTAAAAAACGG 3476972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147711719347200