Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq153 578 5e-160 seq80 452 5e-122 seq90 84.2 3e-11 >seq153 Length=83015 Score = 578 bits (640), Expect = 5e-160 Identities = 716/977 (73%), Gaps = 12/977 (1%) Strand=Plus/Minus Query 154991 CTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTG 155050 |||| ||||| | || | || ||||| |||||| | ||||||||| | | | | | Sbjct 52450 CTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCG 52391 Query 155051 CTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTC 155110 | || | || ||| |||| ||||||||||| ||||| ||||| ||||||||||||| Sbjct 52390 CAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTC 52331 Query 155111 GTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCC 155170 ||||||| || |||| ||| | | || || ||||| || || |||||||| || | | Sbjct 52330 GTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCTGGTGCCATTATTC 52271 Query 155171 CTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATG 155230 ||| ||| ||| |||||| | ||||| || || || |||||||| ||| | |||||| Sbjct 52270 CTACTTCTGCCGCTATTGGTTTGCACTTTTACCCGATCTGGGAAGCTGCATCCGTTGATG 52211 Query 155231 AGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCA 155290 | ||| | ||||| |||||||||| |||| | || | ||||| | | || | Sbjct 52210 AATGGCTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGT-- 52153 Query 155291 CAGCATACTGT---GGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGA 155347 ||| | | | |||||| ||||||||||| || |||||| || ||||||||||||| Sbjct 52152 -AGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGA 52094 Query 155348 TCTGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTT 155407 | ||||||||| || || || || | ||||| ||||| ||| | | || || Sbjct 52093 TTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAA 52034 Query 155408 TCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATA 155467 | |||||||| ||| ||||||| |||||||| || |||||||||||||| |||| || Sbjct 52033 TTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTA 51974 Query 155468 TGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAG 155527 || | || ||||| || || ||||| || ||||||||||| || |||||| | || |||| Sbjct 51973 TGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAG 51914 Query 155528 CAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCAC 155587 | ||||| ||||| || || || || ||||||||| ||||| ||||| || ||| Sbjct 51913 CTGGTGTATTCGGCGGTTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTT 51854 Query 155588 TAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAG 155647 | ||| | ||||| || || | || ||| || | ||||||| ||||| ||||||| Sbjct 51853 TGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAG 51794 Query 155648 AAGAAACTTATAACATTGTTGCTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATG 155707 |||||||||| |||||||| |||||||| || || || || || | |||||||| |||| Sbjct 51793 AAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATG 51734 Query 155708 CATCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCA 155767 | ||||||||||| | | | || |||||| | || || ||||| || || | | Sbjct 51733 CTAGTTTCAACAACTCCCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTA 51674 Query 155768 TCTGGGCAACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAACGGTTTCAACTTCA 155827 | ||| |||||| | ||| | || ||||| |||||||| || |||||||| |||| Sbjct 51673 TTTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCA 51614 Query 155828 ACCAGTCTGTAGTAGACGCTAGT---GGTAAAGTCATCCCTACATGGGCAGACATTCTTA 155884 |||| || ||||| || |||| || || || ||| ||||| || ||| ||| Sbjct 51613 ACCAATCAGTAGTTGA---TAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATTA 51557 Query 155885 ACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCTCTTG 155944 |||| ||| |||||||||||||| ||||| || ||||| ||||||||||||||||| | Sbjct 51556 ACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAG 51497 Query 155945 ACCTTGCTGCTGCTGAG 155961 |||| ||||||| |||| Sbjct 51496 ACCTAGCTGCTGTTGAG 51480 >seq80 Length=21647715 Score = 452 bits (500), Expect = 5e-122 Identities = 679/962 (71%), Gaps = 12/962 (1%) Strand=Plus/Plus Query 154991 CTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTG 155050 |||| ||||| | || | || ||||| |||||| | |||||||| | | | | Sbjct 17113469 CTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTAGTGATCCCTACCTTATTGAACG 17113528 Query 155051 CTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTC 155110 | || | || ||| |||| ||||||| || |||| ||||| |||||||||||| Sbjct 17113529 CAACTTCCGTTTTTATTATCGCATTCATTGTTGTTCCTCTAGTAGATATTGATGGTATTT 17113588 Query 155111 GTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCC 155170 ||||||| || || | ||| | | || || ||||| || || ||||||| || | | Sbjct 17113589 GTGAACCTGTTTCTAGATCTCTTCTTTACGGAAACAATATTATTTCTGGTGTCATTATTC 17113648 Query 155171 CTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATG 155230 ||| || ||| |||||| | ||||| || || || | |||||| ||| | |||||| Sbjct 17113649 CTACTTATGTCGCTATTGGTTTGCACTTTTACCCGATCTAGGAAGCTGCATCCGTTGATG 17113708 Query 155231 AGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCA 155290 | ||| | ||||| ||| ||| || |||| | || | ||||| | | || | Sbjct 17113709 AATGGCTATACAACGGTTGTCTTTATGAACTAATTGTTCTACACTTTTTACTTGGTGT-- 17113766 Query 155291 CAGCATACTGT---GGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGA 155347 ||| | | | |||||| ||||||||||| || | |||| || |||||||||||| Sbjct 17113767 -AGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCTGTCTGGGTGTGCGTCCTTGGA 17113825 Query 155348 TCTGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTT 155407 | | ||||||||| || || ||||| | ||||| ||||| ||| | || || Sbjct 17113826 TTTTTGTTGCATATTCAGCTCCAGTTGCAGCTGCTACTGCTGTTTTCTTGAACTACCCAA 17113885 Query 155408 TCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATA 155467 | ||||||| ||| | ||||| |||||||| | |||||||||||||| |||| || Sbjct 17113886 TTTGTCAAGGAAGTTTTTATGATGGTATGCCTCTATGAATCTCTGGTACTTTCAACTTTA 17113945 Query 155468 TGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAG 155527 || | || ||| | || || ||||| || ||||||||||| || |||||| | || |||| Sbjct 17113946 TGATTGTATTCTAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAG 17114005 Query 155528 CAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCAC 155587 | ||||| ||||| || || || || ||||||||| ||||| ||||| || ||| Sbjct 17114006 CTGGTGTATTCGGCGGTTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACTTCTAGTT 17114065 Query 155588 TAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAG 155647 | ||| | ||||| || || | || ||| || | ||||||| ||||| ||||||| Sbjct 17114066 TGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAG 17114125 Query 155648 AAGAAACTTATAACATTGTTGCTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATG 155707 || ||||||| |||||||| | |||||| | || || || || | |||||||| |||| Sbjct 17114126 AAAAAACTTACAACATTGTAGTTGCTCACGACTATTTTGGCCGATTGATCTTCCAATATG 17114185 Query 155708 CATCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCA 155767 | ||||||||||| | | | || |||||| | || || ||||| || || | Sbjct 17114186 CTAGTTTCAACAACTCCCGTTCTTTACATTTCTTCTTAGCAGCTTGGCCGGTAGTAGCTA 17114245 Query 155768 TCTGGGCAACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAACGGTTTCAACTTCA 155827 | ||| |||||| | ||| | || ||||| |||||||| || ||||||| |||| Sbjct 17114246 TTTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAGTTTCA 17114305 Query 155828 ACCAGTCTGTAGTAGACGCTAGTGGTAAA---GTCATCCCTACATGGGCAGACATTCTTA 155884 ||| || |||| || |||| || || || ||| ||||| || ||| ||| Sbjct 17114306 ACCCATCAATAGTTGA---TAGTCAAGAACGTGTTATTAATACTTGGGCTGATATTATTA 17114362 Query 155885 ACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCTCTTG 155944 |||| ||| ||||| ||||||||| ||||| || ||||| |||||||||||||||||| Sbjct 17114363 ACCGTGCTAATCTTGTTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTTT 17114422 Query 155945 AC 155946 || Sbjct 17114423 AC 17114424 >seq90 Length=4948294 Score = 84.2 bits (92), Expect = 3e-11 Identities = 156/226 (69%), Gaps = 6/226 (3%) Strand=Plus/Plus Query 155734 CACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCA 155793 || |||||| | || || ||||| || | || ||| |||||| | ||| | Sbjct 3476982 CATTTCTTCTTAGCGGCTTGGCCGGTAATACATATTTGGTTTACTGCTTTAGGTATTAGC 3477041 Query 155794 ACGATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGACGCT-AGTG- 155851 || | || ||||| || || ||||| || |||||||| || ||||| || | | || Sbjct 3477042 ACTGTAGCTTTCAATCTAAATGGTTTTAATTTCAACCAATCAGTAGTTGATAGTCAATGA 3477101 Query 155852 -GTAAAGTCATCCCTACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTA 155910 || || || ||| |||| || ||| |||| || ||| |||||||||||||| Sbjct 3477102 CGT---GTTATTAATACTTGGGTTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTT 3477158 Query 155911 ATGCACGAGCGTAACGCTCACAACTTCCCTCTTGACCTTGCTGCTG 155956 ||||| | |||| ||||| ||||||||||| || || | ||||| Sbjct 3477159 ATGCATTAAGGTAATGCTCAAAACTTCCCTCTAGAACTAGATGCTG 3477204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584834030329600