Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq153 542 8e-150 seq80 394 3e-105 seq90 93.3 1e-14 >seq153 Length=83015 Score = 542 bits (600), Expect = 8e-150 Identities = 716/993 (72%), Gaps = 0/993 (0%) Strand=Plus/Plus Query 40523 CTCAGCAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCAT 40582 |||| ||| ||||| ||||||||| ||||||||||| ||||| || ||||| |||||||| Sbjct 51480 CTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCAT 51539 Query 40583 ACCTAGACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTC 40642 ||| || | | ||||| || ||||||||||||| ||| || || | | || Sbjct 51540 ACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTATC 51599 Query 40643 TACTACTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCAT 40702 |||||||| ||||| || || |||||||| ||||| ||||||||||| ||||| | Sbjct 51600 AACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAA 51659 Query 40703 GGAGGTAAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCT 40762 | |||| ||| || || | ||||| |||| | | ||||| |||| | |||| Sbjct 51660 AGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGGGA 51719 Query 40763 ATTGTTGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGAT 40822 |||||||| ||||||||| || || | || ||||| |||||||| |||||||| || Sbjct 51720 GTTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACAAT 51779 Query 40823 GTTATAAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGT 40882 ||| ||||| || |||| ||||| || | || || | || |||||| |||| || Sbjct 51780 GTTGTAAGTTTCTTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGT 51839 Query 40883 GGTCTCCCGAATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACC 40942 ||| |||| || | ||||| || | | || ||||||||| ||| | | ||| Sbjct 51840 GGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAGGGAACC 51899 Query 40943 ACCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGC 41002 || || || || || || || | ||| || ||||||||||| ||||||||||| || || Sbjct 51900 GCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGC 51959 Query 41003 TTGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAA 41062 ||||| |||| ||| |||||||| || ||| |||||||| ||||||||||||||| || Sbjct 51960 CTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAA 52019 Query 41063 AGAACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGT 41122 | || ||||| | ||| || | ||||| ||||| ||| |||| | ||||||| Sbjct 52020 ACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGA 52079 Query 41123 GTATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACC 41182 ||||| ||| ||||| || | |||||| || | | | ||||||||||| | ||| Sbjct 52080 ATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACC 52139 Query 41183 AGCGTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTT 41242 || ||||| || | ||||||||| | ||||| |||| ||| || || ||||| Sbjct 52140 CATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCACCGTT 52199 Query 41243 GTATAGCCACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGC 41302 ||||||||| || || | | | ||||||||||| ||||| || || | || || || Sbjct 52200 GTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGGTAAAAGTGCAAACCAATAGC 52259 Query 41303 GTTAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGA 41362 | ||| | |||| | || ||||| ||||||||||| ||||| | | || || || Sbjct 52260 GGCAGAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCGTAAAGAAGAGATCCAGA 52319 Query 41363 AACGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA 41422 ||| || ||||| || ||||| |||||||| || || || || || || ||||| || || Sbjct 52320 AACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAATAAA 52379 Query 41423 ACATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAG 41482 | | || || || | ||| | || ||||| | ||||||||||| || | ||| || Sbjct 52380 AACGGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAG 52439 Query 41483 GCGGTTGTCGGTGCTAGTGACCCAGTTACAAAA 41515 ||||| || ||||| || | ||||||||| || Sbjct 52440 ACGGTTTTCAGTGCTGGTTATCCAGTTACAGAA 52472 >seq80 Length=21647715 Score = 394 bits (436), Expect = 3e-105 Identities = 659/953 (69%), Gaps = 0/953 (0%) Strand=Plus/Minus Query 40542 AGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAGACTCTGTCTGTTA 40601 ||||| ||||||||||| ||||| || ||||| ||||||||| | ||| | | |||| Sbjct 17114420 AGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATAACAAGATTAGCACGGTTA 17114361 Query 40602 AGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTACTGACTGGTTAAAG 40661 | || ||||||||||||| ||| || | | | || |||| ||| |||| || Sbjct 17114360 ATAATATCAGCCCAAGTATTAATAACACGTTCTTGACTATCAACTATTGATGGGTTGAAA 17114301 Query 40662 TTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGGTAAGCCATATGCCA 40721 | |||||||| ||||| ||||||||||| ||||| | | |||| ||| || | Sbjct 17114300 CTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTAAACCAAATAGCT 17114241 Query 40722 ATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTTGAATGAAGCATAT 40781 | ||||| |||| | | ||||| |||| | |||| |||||||| ||||||| Sbjct 17114240 ACTACCGGCCAAGCTGCTAAGAAGAAATGTAAAGAACGGGAGTTGTTGAAACTAGCATAT 17114181 Query 40782 TGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATAAGTCTCGCCTTCC 40841 || || || | || ||||| || |||| ||| |||| ||||| ||||| | |||| Sbjct 17114180 TGGAAGATCAATCGGCCAAAATAGTCGTGAGCAACTACAATGTTGTAAGTTTTTTCTTCT 17114121 Query 40842 TGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTCCCGAATGATTGAG 40901 ||||| || | || || | || |||||| |||| ||||| |||| || | Sbjct 17114120 TGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTA 17114061 Query 40902 GAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACCAAAGACGCCTGCAACG 40961 ||||| || | || ||||||||| ||| | | ||| || || || || || || Sbjct 17114060 GAAGTTACCAAAGAACCATGCATAGCACTAAATAGGGAACCGCCGAATACACCAGCTACA 17114001 Query 40962 CCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAG 41021 || | ||| || ||||||||||| ||||||||||| || || | ||| |||| ||| ||| Sbjct 17114000 CCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTAGAATACAATCATAAAG 17113941 Query 41022 TTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAACCCTGACCGAATGGA 41081 ||||| || ||| ||||| || ||||||||||||| | ||| || |||| | ||| Sbjct 17113940 TTGAAAGTACCAGAGATTCATAGAGGCATACCATCATAAAAACTTCCTTGACAAATTGGG 17113881 Query 41082 TAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTGTATGCCACAAATATCCAT 41141 || ||||| ||||| ||| |||| | |||||||| ||||| ||||| ||||| Sbjct 17113880 TAGTTCAAGAAAACAGCAGTAGCAGCTGCAACTGGAGCTGAATATGCAACAAAAATCCAA 17113821 Query 41142 GGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGCGTATGCTGCTACTCCT 41201 || | || ||| || | | | ||||||||||| | ||| || ||||| || Sbjct 17113820 GGACGCACACCCAGACAGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCA 17113761 Query 41202 ATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAGCCACTCGTCCAGT 41261 | ||||||||| | ||||| |||| ||| | | |||||||||||||| || || | Sbjct 17113760 AGTAAAAAGTGTAGAACAATTAGTTCATAAAGACAACCGTTGTATAGCCATTCATCAACG 17113701 Query 41262 GTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCTCGGAACGACA 41321 | | |||||| |||| ||||| || || | || || ||| | | | |||| | Sbjct 17113700 GATGCAGCTTCCTAGATCGGGTAAAAGTGCAAACCAATAGCGACATAAGTAGGAATAATG 17113641 Query 41322 GCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTCACGTATGCCA 41381 | ||||| ||||||||||| ||||| | | || | ||||| || |||| || ||| Sbjct 17113640 ACACCAGAAATAATATTGTTTCCGTAAAGAAGAGATCTAGAAACAGGTTCACAAATACCA 17113581 Query 41382 TCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAAACATGTGGTAGCAGTTAGT 41441 || |||||||| | || | | || || ||||| || ||| | || || | | | Sbjct 17113580 TCAATATCTACTAGAGGAACAACAATGAATGCGATAATAAAAACGGAAGTTGCGTTCAAT 17113521 Query 41442 AATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAGGCGGTTGTCGGT 41494 || | || |||| || ||||||||||| || | ||| || ||||| || || Sbjct 17113520 AAGGTAGGGATCACTAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGT 17113468 >seq90 Length=4948294 Score = 93.3 bits (102), Expect = 1e-14 Identities = 159/228 (70%), Gaps = 6/228 (3%) Strand=Plus/Minus Query 40528 CAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTA 40587 ||| | ||| |||||||| ||||| ||||| |||| | ||||| ||||||||||| | Sbjct 3477204 CAGCATCTAGTTCTAGAGGGAAGTTTTGAGCATTACCTTAATGCATAACTTCCATACCAA 3477145 Query 40588 GACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTAC--CATT-AGCGTCTA 40644 | | | |||| || |||| |||||||| ||| || || |||| | || | Sbjct 3477144 GGTTAGCACGATTAATAATATCAACCCAAGTATTAATAAC---ACGTCATTGACTATCAA 3477088 Query 40645 CTACTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGG 40704 ||||||| ||||| || ||||||||||| || || ||||| | ||| ||||| | | Sbjct 3477087 CTACTGATTGGTTGAAATTAAAACCATTTAGATTGAAAGCTACAGTGCTAATACCTAAAG 3477028 Query 40705 AGGTAAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTA 40752 |||| ||| || || ||||| |||| | | ||||| |||| Sbjct 3477027 CAGTAAACCAAATATGTATTACCGGCCAAGCCGCTAAGAAGAAATGTA 3476980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143702126965440