Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq153 616 2e-171 seq80 489 2e-133 seq90 89.7 6e-13 >seq153 Length=83015 Score = 616 bits (682), Expect = 2e-171 Identities = 740/1002 (74%), Gaps = 18/1002 (2%) Strand=Plus/Plus Query 67349 AGACTCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTC 67408 || |||| ||||||| ||||| ||||||||||||||||| ||||| || ||||||||||| Sbjct 51477 AGCCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 51536 Query 67409 CATTCCAAGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGC 67468 ||| ||||| || | ||||| || || ||||||||| ||| || || ||| Sbjct 51537 CATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAAC---ACGTCCTTG 51593 Query 67469 G---TCAACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACAC 67525 ||||| || ||||||||||| |||||||| || |||||||| |||||||| | Sbjct 51594 ACTATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAAT 51653 Query 67526 ACCCATTGCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACT 67585 ||| | ||||| ||||| || | || || || | || || | |||||| || | | Sbjct 51654 ACCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGA 51713 Query 67586 TCTTGAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGC 67645 | |||||||||||| ||||| ||||||||||| || || || || || |||||||| Sbjct 51714 ACGGGAGTTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGC 51773 Query 67646 AACAATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTG 67705 |||||||||||||| ||||||||||| ||||| ||||||| | || || || | Sbjct 51774 TACAATGTTGTAAGTTTCTTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATT 51833 Query 67706 CTCAGTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAG 67765 || || ||||| ||||| | | |||||| || | ||||| |||||||||||||| || Sbjct 51834 TTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAG 51893 Query 67766 TGAACCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTG 67825 ||||| ||||||||||| ||||| || | ||| || |||||||||||||| |||||||| Sbjct 51894 GGAACCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTG 51953 Query 67826 CTCTGCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTC 67885 ||| || ||||| || | ||| |||| ||||||||||| || || |||||||| | || Sbjct 51954 CTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATC 52013 Query 67886 AGAGAAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGG 67945 ||| ||| |||||||| | || |||| |||||| ||||| || || | || || Sbjct 52014 AGAAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGG 52073 Query 67946 AGCAGAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTG 68005 ||| || ||||| ||| ||||||||||||||||| |||||| || ||||||||||| Sbjct 52074 AGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTC 52133 Query 68006 ACGACC---ACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGG 68062 |||||| | | | ||| | || | | ||||| | || | |||| |||| Sbjct 52134 ACGACCCATATAACAAGCT---ACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGG 52190 Query 68063 TCCACCATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAG 68122 ||||| || || | ||| ||||| | | ||| ||||||||||| || || ||||| | Sbjct 52191 ACCACCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGGTAAAAGTGCAA 52250 Query 68123 ACCGATTGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAG 68182 ||| || ||| ||| |||||| || ||||||||||| || ||||| ||||| | || Sbjct 52251 ACCAATAGCGGCAGAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCGTAAAGAAG 52310 Query 68183 CGAACCTGCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGC 68242 || || | ||||||||| | |||||||| ||||| |||||||| || ||||||||||| Sbjct 52311 AGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGC 52370 Query 68243 AATGATGAA---GCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCA 68299 || || || | |||| ||| | | ||| ||| |||||||| ||||| ||||| Sbjct 52371 GATAATAAAAACGGAAGT---TGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCA 52427 Query 68300 ACCAACATAGATGCGATTGTCAACTGAGGTGACCCAGTTACA 68341 |||| || | || || ||| ||| | ||||||||| Sbjct 52428 TCCAATGTAAAGACGGTTTTCAGTGCTGGTTATCCAGTTACA 52469 >seq80 Length=21647715 Score = 489 bits (542), Expect = 2e-133 Identities = 680/946 (72%), Gaps = 16/946 (2%) Strand=Plus/Minus Query 67367 GTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAGTCCTGCTCT 67426 || |||||||||||||||||| ||||| || |||||||||||||| |||| || | Sbjct 17114424 GTAAAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATAACAAGATTAGCACG 17114365 Query 67427 GTTAAGGATGTCTGCCCAAGTAGGAAT--CACTTTACCACCTGCGTCAACGACGGATTGG 67484 ||||| || || ||||||||| ||| ||| || || ||||| | ||| || Sbjct 17114364 GTTAATAATATCAGCCCAAGTATTAATAACACGTTCTTGACTA--TCAACTATTGATGGG 17114307 Query 67485 TTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGCAGTGAACCAG 67544 ||||| ||||||| || |||||||| |||||||| | ||| | ||||| ||||| Sbjct 17114306 TTGAAACTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTAAACCAA 17114247 Query 67545 ATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAAAGAT 67604 || || || || | || || | |||||| || | | | |||||||||||| Sbjct 17114246 ATAGCTACTACCGGCCAAGCTGCTAAGAAGAAATGTAAAGAACGGGAGTTGTTGAAACTA 17114187 Query 67605 GCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTTGTAAGTCTCT 67664 ||||| ||||||||||| || || || || | |||||| | |||||||||||||| | | Sbjct 17114186 GCATATTGGAAGATCAATCGGCCAAAATAGTCGTGAGCAACTACAATGTTGTAAGTTTTT 17114127 Query 67665 TCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGTTTCTCTGATA 67724 |||||||| ||||| ||||||| | || || || | || || ||||| ||||| Sbjct 17114126 TCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATC 17114067 Query 67725 AGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACCGAATACACCT 67784 | | |||||| || | |||||| |||||||||||||| || ||||| ||||||||||| Sbjct 17114066 AAACTAGAAGTTACCAAAGAACCATGCATAGCACTAAATAGGGAACCGCCGAATACACCA 17114007 Query 67785 GCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAAC 67844 ||||| || | ||| || |||||||||||||| ||||||||||| || | ||| || | | Sbjct 17114006 GCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTAGAATACAATC 17113947 Query 67845 ATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACCTTGACCG 67904 || |||| ||||||||||| || | |||||||| | ||| | ||| ||||||| Sbjct 17113946 ATAAAGTTGAAAGTACCAGAGATTCATAGAGGCATACCATCATAAAAACTTCCTTGACAA 17113887 Query 67905 AAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTATGCTACACAG 67964 | || ||| |||||| ||||| || || | |||||||| || ||||| ||| | Sbjct 17113886 ATTGGGTAGTTCAAGAAAACAGCAGTAGCAGCTGCAACTGGAGCTGAATATGCAACAAAA 17113827 Query 67965 ATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACC---ACAGTATGCT 68021 ||||||||||||| ||| |||| | || ||||||||||| |||||| | | | ||| Sbjct 17113826 ATCCAAGGACGCACACCCAGACAGAAACTAAGTTCCCACTCACGACCCATATAACAAGCT 17113767 Query 68022 GTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATACAACCAC 68081 | || | | ||||| | || | |||| || | | ||| || || | ||| Sbjct 17113766 ---ACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAAGACAACCGTTGTATAGCCAT 17113710 Query 68082 TCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTTTGAACTA 68141 ||||| | | ||| |||||| |||| || || ||||| | ||| || ||| || || Sbjct 17113709 TCATCAACGGATGCAGCTTCCTAGATCGGGTAAAAGTGCAAACCAATAGCGACATAAGTA 17113650 Query 68142 GGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAACAGGTTCT 68201 |||| || |||||||||| || ||||| ||||| | || || | | ||||||||| Sbjct 17113649 GGAATAATGACACCAGAAATAATATTGTTTCCGTAAAGAAGAGATCTAGAAACAGGTTCA 17113590 Query 68202 CTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAA---GCAAGTT 68258 | |||||||| ||||| ||| |||| | |||||||||| || || || | ||||| Sbjct 17113589 CAAATACCATCAATATCTACTAGAGGAACAACAATGAATGCGATAATAAAAACGGAAGTT 17113530 Query 68259 GCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACCAA 68304 || | | | ||| ||| |||| || ||||| ||||| |||| Sbjct 17113529 GC-GTT--CAATAAGGTAGGGATCACTAAAACACCAAACCATCCAA 17113487 >seq90 Length=4948294 Score = 89.7 bits (98), Expect = 6e-13 Identities = 136/192 (71%), Gaps = 4/192 (2%) Strand=Plus/Minus Query 67357 CAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAA 67416 ||||| | || || ||||||||||| ||||| |||| | |||||||||||||| |||| Sbjct 3477204 CAGCATCTAGTTCTAGAGGGAAGTTTTGAGCATTACCTTAATGCATAACTTCCATACCAA 3477145 Query 67417 GTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAAT--CACTTTACCACCTGCGTCAAC 67474 | || | |||| || || |||||||| ||| ||| | | || ||||| Sbjct 3477144 GGTTAGCACGATTAATAATATCAACCCAAGTATTAATAACACGTCATTGACT--ATCAAC 3477087 Query 67475 GACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGC 67534 || ||||||||||| || ||||| || || ||||| || | ||| | ||| | || Sbjct 3477086 TACTGATTGGTTGAAATTAAAACCATTTAGATTGAAAGCTACAGTGCTAATACCTAAAGC 3477027 Query 67535 AGTGAACCAGAT 67546 ||| ||||| || Sbjct 3477026 AGTAAACCAAAT 3477015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566946066105600