Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq92 109 8e-19 seq126 100 4e-16 seq139 96.9 5e-15 seq75 96.9 5e-15 seq101 86.0 9e-12 >seq92 Length=17487894 Score = 109 bits (120), Expect = 8e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| |||| || | || || || || || || ||||||| ||| || Sbjct 10601486 ATGCAAATCTTTGTTAAGACTCTTACCGGGAAGACCATAACCCTAGAAGTTGAAAGCTCA 10601427 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||||| || ||| || |||||||||||||| || |||||||| ||| Sbjct 10601426 GACACCATAGACAACGTCAAGGCTAAGATTCAAGATAAAGAAGGAATCCCTCCAGACCAA 10601367 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||| | || | ||| ||||| || ||||| ||| | || || || ||||| || Sbjct 10601366 CAAAGACTTATCTTTGCTGGTAAACAACTCGAGGATGGTCGTACATTGTCGGATTACAAC 10601307 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || |||||| | ||||| || || || | || || ||||| ||| Sbjct 10601306 ATCCAAAAAGAGTCAACGCTCCACTTGGTTCTTAGGTTGAGAGGTGGT 10601259 Score = 104 bits (114), Expect = 3e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || |||| || | || || || || ||||| |||||||| ||| || Sbjct 12099585 ATGCAAATCTTCGTTAAGACTCTTACAGGGAAGACCATTACCTTAGAAGTTGAAAGCTCA 12099644 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||||| || ||| || |||||||||||||| || |||||||| ||| Sbjct 12099645 GACACAATAGACAACGTAAAGGCTAAGATTCAAGATAAAGAAGGAATCCCTCCAGATCAA 12099704 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||| | || | ||| ||||| || || || ||| | || || | ||||| || Sbjct 12099705 CAAAGACTTATCTTTGCTGGTAAACAACTTGAGGATGGTCGTACATTGGCTGATTACAAC 12099764 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || |||||| | || ||||| || || | || || ||||| || Sbjct 12099765 ATCAAAAAAGAGTCAACTCTTCACTTGGTTCTTAGGTTGAGAGGTGG 12099811 >seq126 Length=8766530 Score = 100 bits (110), Expect = 4e-16 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||||||| | ||||| | ||||| ||||| ||||| |||||||| || || Sbjct 5178213 AATGCAAATATTTGTGAAAACCCTAACTGGTAAAACAATTACCTTAGAAGTTGAGAGCTC 5178154 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| ||||| || || || ||||| || ||||| || ||||| || || Sbjct 5178153 GGACACGATTGACAACGTCAAGGCGAAGATTCAAGACAAGGAAGGAATCCCTCCGGACCA 5178094 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||| ||| | || | || ||||| ||||| || ||| | ||| | |||||||||| Sbjct 5178093 ACAGAGACTCATCTTCGCTGGTAAACAGCTTGAGGATGGTCGCACTCTTGCAGATTATAA 5178034 Query 156002 TAT 156004 ||| Sbjct 5178033 TAT 5178031 >seq139 Length=20634497 Score = 96.9 bits (106), Expect = 5e-15 Identities = 146/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||||||||| | |||||| |||||||||| || || || | || || || ||| Sbjct 11242238 ATGCAAATATTCGTGAAAACACTGACTGGAAAGACCATCACTCTCGAGGTTGAGAGCTCT 11242297 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || || || || || || || || ||||| || ||||| || || Sbjct 11242298 GACACCATCGACAATGTTAAGGCAAAGATCCAGGACAAGGAAGGGATTCCTCCGGATCAG 11242357 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||| | |||||| || || || |||||| | | || ||| | ||||| | Sbjct 11242358 CAAAGATTGATCTTTGCCGGAAAACAACTAGAAGATGGCCGGACCTTAGCTGATTACA-- 11242415 Query 156003 ATATCCAAA--GAGGCGACGCTTCAT 156026 | ||||||| ||| | ||||||||| Sbjct 11242416 ACATCCAAAAGGAGTCTACGCTTCAT 11242441 Score = 95.1 bits (104), Expect = 2e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || ||||||| |||||||| || || || || || || Sbjct 11242466 ATGCAAATCTTTGTGAAGACTCTGACTGGTAAAACTATCACCTTGGAGGTTGAGAGCTCA 11242525 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || |||||| || || || || ||||| || || |||||||| || Sbjct 11242526 GACACCATCGATAATGTGAAAGCCAAGATCCAGGACAAAGAGGGAATCCCTCCAGACCAG 11242585 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||| | || | || ||||||||||| |||||| | || | | ||||| ||| Sbjct 11242586 CAAAGACTTATATTCGCTGGTAAGCAGCTTGAAGATGGTCGCACGCTTGCCGATTACAAT 11242645 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 || |||||| | || || ||||| ||||| Sbjct 11242646 ATCCAGAAAGAGTCCACTCTCCATTTGGTGTT 11242677 >seq75 Length=6520592 Score = 96.9 bits (106), Expect = 5e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || ||||| || || || || || | || || ||| || Sbjct 967929 ATGCAGATCTTTGTCAAGACGTTGACCGGCAAGACAATCACCCTGGAGGTTGAAAGCTCA 967988 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||||| ||| || || ||||| || ||||| || ||||| || || Sbjct 967989 GACACCATCGATAACGTAAAAGCCAAGATTCAAGACAAGGAAGGTATCCCTCCGGACCAG 968048 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || |||||||| | || || ||||||||||||||| | |||||||| | || || || Sbjct 968049 CAGAGATTGATCTTCGCAGGAAAGCAGCTCGAAGATGGCCGAACTTTAGCTGACTACAAC 968108 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || ||| |||| ||||| || || | | ||||||| ||| Sbjct 968109 ATCCAGAAGGAGTCGACCCTTCACTTGGTCCTCCGTCTAAGAGGTGGT 968156 >seq101 Length=14560423 Score = 86.0 bits (94), Expect = 9e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| | ||||| || || || || | || ||||| ||| Sbjct 13328978 ATGCAAATCTTCGTGAAAACTCTCACTGGCAAGACCATCACTCTCGAGGTCGAGAGCTCT 13329037 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||||| || || || ||||| || ||||| || ||||| || || Sbjct 13329038 GACACCATCGACAACGTTAAGGCAAAGATCCAAGACAAGGAAGGAATTCCTCCGGATCAG 13329097 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||| | ||||| || ||| | |||||| | | |||||| | ||||| || Sbjct 13329098 CAAAGATTGATCTTCGCCGGAAAACAGTTGGAAGATGGCCGTACTTTAGCCGATTACAAC 13329157 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || || || | || |||||||| || | | ||||||| || Sbjct 13329158 ATCCAGAAGGAATCTACCCTTCATTTGGTCCTCCGTCTAAGAGGAGG 13329204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731870536256000