Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq92 113 8e-20 seq126 107 3e-18 seq80 105 1e-17 seq64 105 1e-17 seq47 105 1e-17 seq139 100 5e-16 seq110 84.2 4e-11 >seq92 Length=17487894 Score = 113 bits (124), Expect = 8e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | | | || || || | ||| | ||| || |||||| |||||| Sbjct 10601029 ATACCACCTCTCAACCTAAGAACCAAGTGGAGAGTCGACTCCTTTTGAATATTGTAATCT 10601088 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || | || | || || | ||||||||| ||||| || | ||| ||||| || || Sbjct 10601089 GCCAATGTACGACCATCCTCAAGTTGTTTACCGGCAAAGATGAGTCTTTGTTGATCCGGA 10601148 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || ||| ||| ||||| ||||| ||||| || Sbjct 10601149 GGGATCCCTTCCTTGTCTTGAATCTTAGCTTTAACATTGTCAATAGTGTCTGAGCTCTCA 10601208 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 |||||||| || |||||| |||| || | || || | ||||||||||| Sbjct 10601209 ACTTCTAGGGTTATGGTTGTACCGGTAAGAGTCTTGACAAATATCTGCAT 10601258 Score = 113 bits (124), Expect = 8e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | | | || || || | || | |||||| || || ||||| Sbjct 10601257 ATACCACCTCTCAACCTAAGAACCAAGTGGAGCGTTGACTCTTTTTGGATGTTGTAATCC 10601316 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | || | || || | ||||||||||||||| || | ||| |||||||| || Sbjct 10601317 GACAATGTACGACCATCCTCGAGTTGTTTACCAGCAAAGATAAGTCTTTGTTGGTCTGGA 10601376 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||||||||| || ||| || || || ||| || ||||| ||| Sbjct 10601377 GGGATTCCTTCTTTATCTTGAATCTTAGCCTTGACGTTGTCTATGGTGTCTGAGCTTTCA 10601436 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 |||||||| || ||||| || || || | || |||| || || ||||| Sbjct 10601437 ACTTCTAGGGTTATGGTCTTCCCGGTAAGAGTCTTAACAAAGATTTGCAT 10601486 Score = 113 bits (124), Expect = 8e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || |||||||| | | | || || || | ||| | |||||| || || ||||| Sbjct 12099814 ATCCCACCTCTCAACCTAAGAACCAAGTGAAGAGTTGACTCTTTTTTGATGTTGTAATCA 12099755 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || | || | || || | ||||||||||||||| || | ||| ||||| || || Sbjct 12099754 GCCAATGTACGACCATCCTCAAGTTGTTTACCAGCAAAGATAAGTCTTTGTTGATCTGGA 12099695 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||||||||| || ||| ||||| || ||| || ||||| ||| Sbjct 12099694 GGGATTCCTTCTTTATCTTGAATCTTAGCCTTTACGTTGTCTATTGTGTCTGAGCTTTCA 12099635 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||| |||||||| || || || | || |||| ||| || ||||| Sbjct 12099634 ACTTCTAAGGTAATGGTCTTCCCTGTAAGAGTCTTAACGAAGATTTGCAT 12099585 Score = 107 bits (118), Expect = 3e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || || ||||||| | | ||| | || || | ||||||||| || || || | |||| Sbjct 10600849 ATGTTGTAATCTGCAAGCGTTCGACCATCCTCAAGTTGTTTACCTGCGAAGATGAGTCTC 10600908 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 ||||| || || || || ||||| || ||||| || ||| ||| || || ||||| Sbjct 10600909 TGTTGATCCGGAGGGATCCCTTCCTTGTCTTGAATCTTAGCTTTAACGTTGTCAATAGTG 10600968 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 ||||| || |||||||| |||||||||||||| || | ||||| | ||||||||| Sbjct 10600969 TCTGAGCTCTCCACTTCTAGGGTAATGGTTTTACCGGTGAGGGTTTTCACAAATATCTGC 10601028 Query 172068 AT 172069 || Sbjct 10601029 AT 10601030 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 ||||||||||| || || | |||||||| ||| ||| | || ||||| || ||||| || Sbjct 12099958 TGTTTACCAGCGAAGATGAGTCTCTGTTCGTCCGGTTGGATCCCTTCCTTGTCTTGGATC 12099899 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 ||| || || || ||||| ||||| || |||||||| || |||||||||| Sbjct 12099898 TTAGCCTTGACGTTGTCAATAGTGTCTGAGCTCTCCACTTCTAGGGTTATGGTTTTACTG 12099839 Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069 || | || || | ||||||||||| Sbjct 12099838 GTAAGAGTCTTGACAAATATCTGCAT 12099813 >seq126 Length=8766530 Score = 107 bits (118), Expect = 3e-18 Identities = 134/184 (73%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 |||||||||||||| | || || | || || | ||||||||||| || || | ||| Sbjct 5178030 AATATTATAATCTGCAAGAGTGCGACCATCCTCAAGCTGTTTACCAGCGAAGATGAGTCT 5178089 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||||||||| || || |||||||| || ||||| || || || || || || || Sbjct 5178090 CTGTTGGTCCGGAGGGATTCCTTCCTTGTCTTGAATCTTCGCCTTGACGTTGTCAATCGT 5178149 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 || || || ||||||| ||||| ||||||||||||| ||||| | ||||| || Sbjct 5178150 GTCCGAGCTCTCAACTTCTAAGGTAATTGTTTTACCAGTTAGGGTTTTCACAAATATTTG 5178209 Query 172067 CATT 172070 |||| Sbjct 5178210 CATT 5178213 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | |||| || || || | ||| | || || ||||| ||||| Sbjct 5178439 ATACCACCTCTTAAACGTAGAACCAAGTGGAGAGTCGATTCCTTTTGGATATTGTAATCA 5178498 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | ||| | || || || ||||| || ||||| || |||||||||||||| | Sbjct 5178499 CCCAATGTACGTCCATCTTCTAACTGTTTCCCTGCAAATATCAATCTCTGTTGGTCTGAA 5178558 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||| || || |||||| ||| || || | || || || ||| Sbjct 5178559 GGAATTCCTTCTTTCTCCTGGATTTTAGCTTTGACGTTGTCAACCGTGTCGGAGCTTTCA 5178618 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | || ||||| || || || | || || | ||| || ||||| Sbjct 5178619 ACCTCCAATGTTATGGTCTTGCCTGTAAGAGTCTTCACGAAGATTTGCAT 5178668 >seq80 Length=21647715 Score = 105 bits (116), Expect = 1e-17 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| || | || | || | |||| ||| || |||||| ||||| Sbjct 2366563 ATACCACCACGAAGACGAAGGACAAGGTGAAGTGTAGACTCCTTTTGAATATTGTAATCA 2366504 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || | || || |||| || |||||||| || | |||||| || || || Sbjct 2366503 GCGAGTGTGCGACCATCCTCTCATTGCTTTCCAGCAAAGATAAGTCTCTGCTGATCCGGA 2366444 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||| || || || ||| ||| ||||| || ||||| || ||| Sbjct 2366443 GGGATTCCTTCTTTGTCCTGAATCTTAGCTTTGACATTGTCAATGGTATCAGAACTTTCA 2366384 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 |||||||| || |||||||| ||||||| || || | || || |||||| Sbjct 2366383 ACTTCTAGTGTGATGGTTTTGCCAGTTAGAGTCTTGACAAAGATTTGCATT 2366333 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| || | || ||||| | ||| | ||| || ||| || || || Sbjct 2366791 ATACCACCACGAAGACGGAGAACCAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCA 2366732 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || | | |||| || | || || | |||||| || | ||||| || || ||| Sbjct 2366731 GCGAGAGTCCTTCCGTCTTCAAGCTGCTTCCTAGCAAAGATGAGCCTCTGCTGATCTGGT 2366672 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| ||||| || || || || ||| ||||| || || ||||| || Sbjct 2366671 GGGATTCCCTCTTTGTCCTGAATCTTTGCTTTAACATTGTCAATGGTGTCTGAGCTCTCA 2366612 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | ||| |||||||||||||| | || || | || |||||||| Sbjct 2366611 ACTTCCAAAGTGATGGTTTTACCAGTGAGCGTCTTCACAAAGATCTGCAT 2366562 >seq64 Length=9524166 Score = 105 bits (116), Expect = 1e-17 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 |||||| ||||| | |||| ||| | || || | ||||| ||| | ||||| | ||| Sbjct 3905722 AATATTGTAATCAGCCAAAGTTCGACCATCCTCAAGCTGTTTCCCACCGAAAATGAGTCT 3905663 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 || |||||| |||| || ||||| || || ||||| ||| || || ||| || || Sbjct 3905662 TTGCTGGTCAAGTGGGATCCCTTCCTTGTCATGTATCTTAGCCTTCACGTTATCAATCGT 3905603 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||||| ||| ||||| | |||||||||||| || || | || || ||||| ||||| Sbjct 3905602 GTCTGAGCTTTCCACTTCCAAAGTAATGGTTTTTCCGGTGAGGGTCTTGATGAAAATCTG 3905543 Query 172067 CAT 172069 ||| Sbjct 3905542 CAT 3905540 >seq47 Length=18124089 Score = 105 bits (116), Expect = 1e-17 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || |||||||| || || || ||||| | | |||||| || ||||| |||||||| ||| Sbjct 4075237 TCCTCCAATTGCTTCCCGGCGAAAATCAGACGCTGTTGATCCGGTGGGATTCCTTCCTTA 4075296 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 || || || || || ||||| || ||||| || ||||| || ||||| || || Sbjct 4075297 TCCTGGATCTTCGCCTTCACATTGTCGATTGTATCGGAGGATTCGACCTCTAGGGTTATT 4075356 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || || || |||| ||||| | ||||||||||||||| Sbjct 4075357 GTCTTTCCGGTTAGGGTTTTCACGAATATCTGCATTTT 4075394 >seq139 Length=20634497 Score = 100 bits (110), Expect = 5e-16 Identities = 166/239 (69%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 171833 TTTCATAA--TACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATA 171890 ||||| || | ||||| | || || | || | ||| | ||| | |||||| ||| Sbjct 14477790 TTTCAGAAGCTTCCACCACGGAGACGGAGAACAAGATGAAGAGTTGACTCTTTCTGAATG 14477849 Query 171891 TTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGT 171950 || ||||| | |||| || | || || | ||||| || ||||| |||| ||||||| Sbjct 14477850 TTGTAATCCGCCAAAGCGCGACCATCCTCGAGCTGTTTTCCGGCAAAGATTAGTCTCTGT 14477909 Query 171951 TGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCT 172010 ||||| || || || |||||||| || || || || |||||||| || ||||| Sbjct 14477910 TGGTCCGGAGGGATCCCTTCTTTGTCCTGAATCTTCGCCTTTACATTGTCAATCGTATCC 14477969 Query 172011 GACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || || || ||||| ||||| || || || || | ||||||||||| Sbjct 14477970 GAGCTCTCCACCTCAAGTGTTATGGTCTTACCCGTCAACGTCTTGACAAATATCTGCAT 14478028 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | | | || || || | ||| | ||| || |||||| |||||| Sbjct 14478254 ATACCACCTCTCAACCTAAGAACCAAGTGCAGAGTCGACTCCTTTTGAATATTGTAATCT 14478313 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || | || | || || | |||||| |||||||| || | ||| |||| || || Sbjct 14478314 GCCAATGTACGACCATCCTCAAGTTGTTTCCCAGCAAAGATAAGTCTTGGTTGATCCGGA 14478373 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| |||||||| || || || |||||| || || || || ||| Sbjct 14478374 GGGATTCCTTCCTTATCTTGGATCTTGGCCTTGACATTATCAATGGTGTCAGAGCTTTCG 14478433 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || ||||| || ||||| || || || | || || | || || ||||| Sbjct 14478434 ACCTCTAGTGTTATGGTCTTTCCGGTAAGAGTCTTGACAAAGATTTGCAT 14478483 Score = 87.8 bits (96), Expect = 3e-12 Identities = 158/230 (69%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | |||| || || | |||| || | ||| || ||||| ||||| Sbjct 14478027 ATCCCACCACGGAGTCTTAGAACAAGGTGTAGTGTTGACTCCTTCTGGATATTGTAATCC 14478086 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | ||||| || | || || | || || || ||||| || || |||||||| || | Sbjct 14478087 GCTAAAGTTCTGCCATCTTCAAGCTGCTTGCCGGCAAAGATCAACCTCTGTTGATCTTGA 14478146 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| ||| |||| || || || ||||| || ||||| ||||| ||| Sbjct 14478147 GGGATCCCTTCCTTAGCTTGGATCTTGGCCTTGACATT-GTCATAGTGTCTGAGCTTTCC 14478205 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || || || || || || | |||||| |||||||||||| Sbjct 14478206 ACCTCAAGGGTTATAGTCTTTCCCGTAAGATTTTTAACGAATATCTGCAT 14478255 >seq110 Length=4329799 Score = 84.2 bits (92), Expect = 4e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 171835 TCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTAT 171894 |||| | |||||||| || | || || || || | ||| | |||||| || || | Sbjct 2036220 TCATGGTTCCACCTCTGAGCCTCAAGACCAAGTGAAGAGTTGACTCTTTCTGGATGTTGT 2036161 Query 171895 AATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGT 171954 | || | ||||| ||| | || || | ||| ||||||||||| || | |||||||| | Sbjct 2036160 AGTCAGCTAAAGTTCGACCATCTTCAAGTTGCTTACCAGCAAATATCAGCCTCTGTTGAT 2036101 Query 171955 CAGGTGGTATTCCTTCTTTATCTTGTATT 171983 | ||||||||||| ||||| || ||| || Sbjct 2036100 CTGGTGGTATTCCCTCTTTGTCCTGTTTT 2036072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905134189728000