Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq77 127 6e-24 seq66 109 2e-18 seq47 104 7e-17 seq101 89.7 2e-12 seq75 87.8 5e-12 >seq77 Length=18658056 Score = 127 bits (140), Expect = 6e-24 Identities = 231/338 (68%), Gaps = 0/338 (0%) Strand=Plus/Plus Query 302539 TTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGC 302598 ||||| || ||| |||||| || |||||||||||||||| ||| | || | | | Sbjct 14733308 TTTCTAACTGTCCCATCATACTTAACCATAATGTCTTCCATAGCCTTAACCAACCTTCTC 14733367 Query 302599 TGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCC 302658 ||||| || |||||| ||||| || ||||| |||||||| ||||| | | || ||| Sbjct 14733368 TGAATGTATCCAGTTTCTGATGTCTTCACAGCAGTATCAATAAGACCTTCCCTTCCTCCC 14733427 Query 302659 ATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAA 302718 ||||||||||| || | ||||| || | ||| | | | | || |||| || || Sbjct 14733428 ATAGCATGGAAAAAGAACTCTTGAGGAGTCAACCCACGCAGATAAGAATTCTCGACAAAT 14733487 Query 302719 CCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAG 302778 ||||| || || || ||| ||||| || || |||| |||| ||| | Sbjct 14733488 CCACGACTTTCAGGACCATAGTCATCTTTGGTGAAATGCGGCAATGTCCGCCCATCAAAT 14733547 Query 302779 CCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAA 302838 || |||| || ||||| || ||||| || || || || | || | | ||||||| ||| Sbjct 14733548 CCAAATGGTATTCGCTTCCCTTCAACATTTTGTTGACCGACACAAGCAGTCATCTGAGAA 14733607 Query 302839 ATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCAT 302876 ||||| | ||| || ||||| || || | ||||| Sbjct 14733608 ATATTAATGAAACTTCCTTTGGATCCTGCTGTCACCAT 14733645 >seq66 Length=12628956 Score = 109 bits (120), Expect = 2e-18 Identities = 314/473 (66%), Gaps = 24/473 (5%) Strand=Plus/Minus Query 288889 ATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGTTTG--CTT-AAATCCA 288945 ||||| ||||| || ||||| || | ||||| || | |||| | ||| ||||||| Sbjct 1472688 ATATCAGCTCTATTGGTTGCAGCAACTACAATAACAC---CGGTGTTACCTTCAAATCCA 1472632 Query 288946 TCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAA 289005 ||||| || || | ||||| || || ||||| |||||||| || ||||| Sbjct 1472631 TCCATCTCAGTCAAGAGCTGATTGAGAGTCTGTTCTCTTTCATCGTT---ACCTC----- 1472580 Query 289006 TCACCCGAATC-GCTCCttttt--ttACCAACAGCATCAATTTCGTCAATGAAAATCACA 289062 |||| | | | |||| ||| ||||||||||||| ||||| |||| || | | Sbjct 1472579 -CACCAATACCGGTTCCTCTTTGCCTACCAACAGCATCGATTTCATCAACAAAGACAATG 1472521 Query 289063 CACGGAGAATTTTGTCTCGC--AATTGCAAATAATTCTCTTACACGGGATGCTCCAAGAC 289120 || |||| |||| | | || ||| ||| | || | || | || || |||| || Sbjct 1472520 CAGGGAGCGTTTTCTTTGGCTTTCTTGAAAAGA--TCACGGACTCTTGAGGCACCAACAC 1472463 Query 289121 CAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCG 289179 | ||| |||| || ||||| |||||| | || | | || | ||| | ||| ||||| Sbjct 1472462 CGACAAACATCTCAACAAACTCAGAACCAGAGA-TGGAGAAGAAAGGCACACCAGCTTCA 1472404 Query 289180 CCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACT 289239 || || | || | |||| ||| || ||||| || ||||| || || ||| ||||| Sbjct 1472403 CCAGCAATAGCTTTTGCCAAAAGAGTTTTACCGGTACCAGGAGGACCGATTAACAGAACA 1472344 Query 289240 CCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACA 289299 || || || | || || ||| | | | || |||| || |||| | ||| || || Sbjct 1472343 CCTTTCGGGATCTTAGCACCAACTGCGGTGAATCTCTCGGGTTTCTTCAGAAACTCAACC 1472284 Query 289300 ATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 | |||| | || | ||||| |||||| ||| || ||||| |||| || Sbjct 1472283 ACTTCCATGAAATCTTGCTTTGCTTCATCAACTCCAGCAACATCGTCAAATGT 1472231 >seq47 Length=18124089 Score = 104 bits (114), Expect = 7e-17 Identities = 214/316 (68%), Gaps = 2/316 (1%) Strand=Plus/Minus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 ||||| |||||||||||||| || || || | | |||| | ||||| || | Sbjct 14209702 ACCAATCGCATCAATTTCGTCTATAAATATTATGCTAGGAGCACACTGTCTAGCTTCTTG 14209643 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 ||| || | ||| || | || | ||||| ||||||| |||| || | || || || | Sbjct 14209642 AAACAAGTTTCTAACTCTTGAAGGTCCAACACCAACAAACATCTCCATGAAATCTGATCC 14209583 Query 289149 GGATACTTGAATGAAT-GTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207 |||| | || ||| | || || ||| |||||| || |||| |||||||||| Sbjct 14209582 AGATA-TCGACAGAAACGGCACTGCTGATTCTCCTGCTGTAGCTTTCGCTAGAAGTGTCT 14209524 Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACT 289267 | || ||||| ||||| || |||| || | || ||||| | || || || || Sbjct 14209523 TTCCAGTTCCTGGTGGACCAACTAAAAGCGCACCTTTTGGAATCTTAGCTCCCAATTCCT 14209464 Query 289268 TATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCAT 289327 ||| |||| || ||| || ||| | |||| |||| || ||| | ||| ||||| | Sbjct 14209463 CATACTTCTTCGGATTCTGTAGAAAATGCACAAATTCCATAATTTCTTGTTTCGCCTCCT 14209404 Query 289328 CACATCCTGCTACATC 289343 ||||||| || ||||| Sbjct 14209403 CACATCCCGCAACATC 14209388 >seq101 Length=14560423 Score = 89.7 bits (98), Expect = 2e-12 Identities = 268/410 (65%), Gaps = 14/410 (3%) Strand=Plus/Minus Query 288938 TAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAAC 288997 |||| || ||||| |||||||| || || || || || || | || || ||| | Sbjct 5963402 TAAACCCGTCCATTTCGGTTAAAATCTGGTTTAGCGTCTGCTCACGCTCGTCGTTTCCTC 5963343 Query 288998 CTCTTGAATCACCCGAATCGCTCCttt--ttttACCAACAGCATCAATTTCGTCAATGAA 289055 ||| | || || | |||| | || | |||||||||||||| || ||||| || Sbjct 5963342 CTCCTAAACCA--------GTTCCTCTCATTCTCCCAACAGCATCAATCTCATCAATAAA 5963291 Query 289056 AATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCC 289115 | | ||| || ||||| | || | || || ||||| || | || ||||| Sbjct 5963290 CACTAAACAGGGTGAATTAGCCTTAGCCTTGTTGAACAAGTCTCTAACCCTAGACGCTCC 5963231 Query 289116 AAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGC 289175 | ||||||| |||| |||| || || || | || | | | || | || || Sbjct 5963230 TACACCAACAAACATCTCTATGAACTCCGACCCTGACAATGAGAAAAACGGAACTCCAGC 5963171 Query 289176 TTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAG 289235 || || |||| ||| | |||| || ||||| || ||||| || ||||| ||| | Sbjct 5963170 TTTTCCGGCTATAGCCTTGGCCAAGAGAGTCTTTCCCGTTCCCGGCGGTCCGGTTAACAA 5963111 Query 289236 AACTCCCTTTGGTACTTTTGC-CCCAGCAGACTTATA-TTTCTCAGGGCTCTTTAAAAAT 289293 || || ||||| | ||| || |||| || || | | |||||| ||| | | || ||| Sbjct 5963110 CACGCCTTTTGGGATTTTAGCTCCCA--AGGCTGAGAATTTCTCTGGGGTTCTCAAGAAT 5963053 Query 289294 TCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATC 289343 || || || ||||||| || | || || || || |||||||||||| Sbjct 5963052 TCAACGATCTCCTCAAAGTCTTGCTTGGCTTCGTCTACTCCTGCTACATC 5963003 >seq75 Length=6520592 Score = 87.8 bits (96), Expect = 5e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 408940 AAAAGTTCTATTAACTCAGTTGGTTAGAGTGTCGGTCTTATGAGCCGAAAGTCGTGGGTT 408999 || || ||| || ||||||||||||||| || |||||||||||||||| |||| ||||| Sbjct 3749696 AATAGGTCTCCTAGCTCAGTTGGTTAGAGCGTTGGTCTTATGAGCCGAAGGTCGAGGGTT 3749755 Query 409000 CGAGTCCCACATAGAACATTTTT 409022 |||| ||| | ||| ||||||| Sbjct 3749756 CGAGCCCCGCCGAGACCATTTTT 3749778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471814582773920