Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq64 178 2e-38 >seq64 Length=9524166 Score = 178 bits (196), Expect = 2e-38 Identities = 205/274 (75%), Gaps = 4/274 (1%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||||||||||||||| ||||||||||| ||||| || || | | |||| | ||||| Sbjct 403942 GAGTGGATGTTCTCGATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGACTTGA 403883 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || |||||| ||| ||||| |||||| ||||| |||||| |||||||| Sbjct 403882 ACATCGGACATGAATCGGGAAGCCAGATTCTCGAGAACGATTCCGTCGGATGCGGCGAAG 403823 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGT--GGA 869810 ||||| || ||||| ||||| ||||| |||||| ||||| |||| | |||| | || Sbjct 403822 AAAGCGAGCACGTGTTTGATGAAGTGTCGCTCGCCGTCGTTGAGATTCTCCCAATCGCGA 403763 Query 869811 CGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGT 869870 | || | | | | || || |||||||| ||||| | || ||||||||||| |||| Sbjct 403762 CCGTCTTGTGAC--AAATCGACTTCCTCGGCCGTCCAAAAGGATGCCTCGGCCTTCTTGT 403705 Query 869871 ACATCTCCCATACTTGCTGGTAGCGGATAGGGAA 869904 |||||||||| | || ||||| | || ||||| Sbjct 403704 ACATCTCCCAGATCTGTGGGTAGTGAATTGGGAA 403671 Score = 149 bits (164), Expect = 8e-30 Identities = 199/273 (73%), Gaps = 8/273 (3%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 |||||||| || ||||| || ||| |||| | ||||||||||| ||||||||| Sbjct 404221 CCTTCGTCTCGCGAGATCAACTCATTGGAGAAGGTTAATCCGGGCATGAGACCGCGCTTC 404162 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGC-AAA 869298 || ||||| || || | ||||||||| || ||||| ||||| || |||||| ||| ||| Sbjct 404161 TTAAGCCAGAAAATCGAGCAGAAACTACCGGAGAAGAAGATACCTTCGACGCAGGCGAAA 404102 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358 ||| | || |||||||| ||||| | ||| || || |||||| |||||||||| Sbjct 404101 GCC-ACGATACGCTCGGCGAAGGTCT-GAGATCC-----GTCGATCCATGTCATCGCCCA 404049 Query 869359 GTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTC 869418 | ||| || ||| || | || | || ||||||||||||||||| ||||| | || Sbjct 404048 CTGGGCTTTCTTCGCGACGCAAGGGATGGTCTCGATGGCGCGAAAGAGATGGTCTCTCTC 403989 Query 869419 GGCCGGGTCCTTGACATAGGTGTCGATCAGGAG 869451 |||||||| || ||||||| ||||| Sbjct 403988 CTTGTTGTCCTTGATGTATGTGTCGAGGAGGAG 403956 Score = 107 bits (118), Expect = 2e-17 Identities = 214/312 (69%), Gaps = 4/312 (1%) Strand=Plus/Minus Query 868699 GTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCAT 868758 ||| ||||| || | | |||||| ||||| || || |||| |||||||| | ||||| Sbjct 404528 GTAATCGCCAACTCTCTTCTCGAAGAAGTTTGTTTTCCCCTGAAGCGAGATAAGTTCCAT 404469 Query 868759 CCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCG 868818 ||| ||||| || | | ||| ||| || |||| |||| | || || | Sbjct 404468 CCAATCAAACGGATTAGCCACACCGTACACCTTGCCGTATCCAAGCGCACCCAGAAGCCT 404409 Query 868819 GTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCAC 868878 || || || || |||||||| || | ||| ||| | |||||| || | | ||| Sbjct 404408 ATCCGCAACGAATTCGATGTATTGACTCATTAGGTCACGGTTCATCCCCACCAACGCGCA 404349 Query 868879 CGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATGATCTGCCT 868938 || |||| |||| ||||||||| |||||||||||||||| ||| || ||| || | Sbjct 404348 GGGAAGCGCGTCGCACACAAACTCCCTCTCGATCTCGACGGCGTCGCAGACGAT-TGATT 404290 Query 868939 GGGCACG-TCGGCCGAGGGCTT-GTTGACGAGCATCGTGTAGAGCAGGCAGGCAAAGTCG 868996 | || || ||||| |||| || | || | ||||||| |||||| || || ||| Sbjct 404289 TCACGCGCTCTTCCGAGAGCTTCGTCCTCAAG-AGAGTGTAGATCAGGCACGCGAAATCG 404231 Query 868997 CAGTGCAACCCT 869008 ||||| || ||| Sbjct 404230 CAGTGTAAGCCT 404219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107126069650720