Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq64 199 6e-45 >seq64 Length=9524166 Score = 199 bits (220), Expect = 6e-45 Identities = 244/328 (74%), Gaps = 9/328 (3%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 |||||||| || |||||| || ||| ||| | ||||||||||| ||||||||| Sbjct 404221 CCTTCGTCTCGCGAGATCAACTCATTGGAGAAGGTTAATCCGGGCATGAGACCGCGCTTC 404162 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGC-AAA 794459 || ||||| || || | |||||||| || ||||| ||||| || |||||| ||| ||| Sbjct 404161 TTAAGCCAGAAAATCGAGCAGAAACTACCGGAGAAGAAGATACCTTCGACGCAGGCGAAA 404102 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 ||| |||| |||||||| || || | || || || |||||| |||||||||| Sbjct 404101 GCC-ACGATACGCTCGGCGAAGGTCTG-AGATCC-----GTCGATCCATGTCATCGCCCA 404049 Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTC 794579 || || || ||| || | || | || ||||||||||||||||| ||||| |||| Sbjct 404048 CTGGGCTTTCTTCGCGACGCAAGGGATGGTCTCGATGGCGCGAAAGAGATGGTCTCTCTC 403989 Query 794580 GACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTC 794639 |||||||| ||| ||||||| |||||| ||| |||| ||||||||||| || Sbjct 403988 CTTGTTGTCCTTGATGTATGTGTCGAGGAGGAGGCTGTACATCTCGGAGTGGATGTTCTC 403929 Query 794640 GATGGCGATCTGGAAGCCATA-AAAGCA 794666 ||| ||||||||||| || || |||||| Sbjct 403928 GATCGCGATCTGGAAACCGTAGAAAGCA 403901 Score = 154 bits (170), Expect = 2e-31 Identities = 174/231 (75%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| | ||||| || || |||||| ||| ||||| ||||| ||||| ||| Sbjct 403897 GCCTCCGAGACTTGAACATCGGACATGAATCGGGAAGCCAGATTCTCGAGAACGATTCCG 403838 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 ||| |||||||| || ||||| ||||| ||||| ||||| |||||| ||||| |||| Sbjct 403837 TCGGATGCGGCGAAGAAAGCGAGCACGTGTTTGATGAAGTGTCGCTCGCCGTCGTTGAGA 403778 Query 796270 GAGACCCAGTGG--ACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGG 796327 |||| | | ||||| | | | | ||||| |||||||| ||||||||||| | Sbjct 403777 TTCTCCCAATCGCGACCGTCTTGTGACAAA--TCGACTTCCTCGGCCGTCCAAAAGGATG 403720 Query 796328 CCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 |||||||||| |||||||||||||| ||| || ||||| | || ||||||| Sbjct 403719 CCTCGGCCTTCTTGTACATCTCCCAGATCTGTGGGTAGTGAATTGGGAACA 403669 Score = 96.9 bits (106), Expect = 5e-14 Identities = 207/304 (68%), Gaps = 4/304 (1%) Strand=Plus/Minus Query 793908 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 793967 || ||||| || | | |||||| ||||| || || |||| |||||||| | |||||| Sbjct 404527 TAATCGCCAACTCTCTTCTCGAAGAAGTTTGTTTTCCCCTGAAGCGAGATAAGTTCCATC 404468 Query 793968 CACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGG 794027 || ||||| || ||| ||| ||| || | || |||| | || || | Sbjct 404467 CAATCAAACGGATTAGCCACACCGTACACCTTGCCGTATCCAAGCGCACCCAGAAGCCTA 404408 Query 794028 TCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACG 794087 || || |||||||| ||||| || | ||| ||| | |||||| || | | ||| | Sbjct 404407 TCCGCAACGAATTCGATGTATTGACTCATTAGGTCACGGTTCATCCCCACCAACGCGCAG 404348 Query 794088 GGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGATCTGCCTG 794147 || |||| |||| |||||||| |||||||||||||||| ||| || ||| || | Sbjct 404347 GGAAGCGCGTCGCACACAAACTCCCTCTCGATCTCGACGGCGTCGCAGACGAT-TGATTT 404289 Query 794148 GGCACG-TCGGACGACGGCTT-GTCGACGAGCATCGTGTAGAGCAGGCAGGCAAAGTCGC 794205 | || || ||| |||| ||| | || | ||||||| |||||| || || |||| Sbjct 404288 CACGCGCTCTTCCGAGAGCTTCGTCCTCAAG-AGAGTGTAGATCAGGCACGCGAAATCGC 404230 Query 794206 AATG 794209 | || Sbjct 404229 AGTG 404226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916229380070240