Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq80 102 7e-17 seq92 98.7 8e-16 seq75 91.5 1e-13 seq101 87.8 1e-12 seq139 84.2 2e-11 >seq80 Length=21647715 Score = 102 bits (112), Expect = 7e-17 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 107543 TAAGAGGTTTAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGA 107602 |||||||| || ||||||| |||||||| ||| |||| ||||||||||| || | || Sbjct 2366323 TAAGAGGTGGAA--TGCAAATCTTTGTCAAGACTCTAACTGGCAAAACCATCACACTAGA 2366380 Query 107603 AACGGAGGCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGT 107662 | || | ||||| | | | | || ||| |||||| || |||||||| | Sbjct 2366381 AGTTGAAAGTTCTGATACCATTGACAATGTCAAAGCTAAGATTCAGGACAAAGAAGGAAT 2366440 Query 107663 GCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAAT 107722 || |||||||||||||||||| | ||| || || || ||||| | ||| | Sbjct 2366441 CCCTCCGGATCAGCAGAGACTTATCTTTGCTGGAAAGCAATGAGAGGATGGTCGCACACT 2366500 Query 107723 GGCGGACTACAACATTCAAAAGGAGTCTAC 107752 || || ||||| ||||||||||||||||| Sbjct 2366501 CGCTGATTACAATATTCAAAAGGAGTCTAC 2366530 >seq92 Length=17487894 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || |||||||| ||| | || || | |||||| ||| | ||| ||| ||| Sbjct 10601258 ATGCAGATATTTGTCAAGACTCTTACCGGTACAACCATAACCCTAGAAGTTGAGAGCTCA 10601199 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || ||| | | | | || ||| |||||| || || ||||| | || |||||| Sbjct 10601198 -GACACTATTGACAATGTTAAAGCTAAGATTCAAGACAAGGAAGGGATCCCTCCGGATCA 10601140 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 || ||||| || | ||| |||||||| || ||||| | ||| |||| || ||||| Sbjct 10601139 ACAAAGACTCATCTTTGCCGGTAAACAACTTGAGGATGGTCGTACATTGGCAGATTACAA 10601080 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 |||||||||||||| || | ||| |||| | || ||| |||| || Sbjct 10601079 TATTCAAAAGGAGTCGACTCTCCACTTGGTTCTTAGGTTGAGAGGTGG 10601032 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| || || || ||| | ||||| || ||||||||| | ||| || ||| Sbjct 12099585 ATGCAAATCTTCGTTAAGACTCTTACAGGGAAGACCATTACCTTAGAAGTTGAAAGCTCA 12099644 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || | | | | ||||| |||||| ||||||||||| | || ||||| Sbjct 12099645 -GACACAATAGACAACGTAAAGGCTAAGATTCAAGATAAAGAAGGAATCCCTCCAGATCA 12099703 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 || |||||||| | ||| |||||||| || ||||| | ||| |||| || ||||| Sbjct 12099704 ACAAAGACTTATCTTTGCTGGTAAACAACTTGAGGATGGTCGTACATTGGCTGATTACAA 12099763 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||| |||| ||||| || | ||| |||| | || ||| |||| || Sbjct 12099764 CATCAAAAAAGAGTCAACTCTTCACTTGGTTCTTAGGTTGAGAGGTGG 12099811 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| ||||| || ||| | || || || ||||| ||| | ||| || ||| Sbjct 10601486 ATGCAAATCTTTGTTAAGACTCTTACCGGGAAGACCATAACCCTAGAAGTTGAAAGCTCA 10601427 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || | | | | || || |||||| ||||||||||| | || || || Sbjct 10601426 -GACACCATAGACAACGTCAAGGCTAAGATTCAAGATAAAGAAGGAATCCCTCCAGACCA 10601368 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 || |||||||| | ||| |||||||| || ||||| | ||| || |||| ||||| Sbjct 10601367 ACAAAGACTTATCTTTGCTGGTAAACAACTCGAGGATGGTCGTACATTGTCGGATTACAA 10601308 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||| ||||| ||||| ||| | ||| |||| | || ||| |||| || Sbjct 10601307 CATCCAAAAAGAGTCAACGCTCCACTTGGTTCTTAGGTTGAGAGGTGG 10601260 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || ||||| ||||| | || || |||||||||||| | ||| |||| ||| Sbjct 10601030 ATGCAGATATTTGTGAAAACCCTCACCGGTAAAACCATTACCCTAGAAGTGGAGAGCT-C 10600972 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || ||| | | | | || ||| |||||| || || ||||| | || |||||| Sbjct 10600971 AGACACTATTGACAACGTTAAAGCTAAGATTCAAGACAAGGAAGGGATCCCTCCGGATCA 10600912 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||||| || | || |||||||| || ||||| | ||| | || || ||||| Sbjct 10600911 ACAGAGACTCATCTTCGCAGGTAAACAACTTGAGGATGGTCGAACGCTTGCAGATTACAA 10600852 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| || ||||| || || Sbjct 10600851 CATCCAGAAGGAATCAAC 10600834 >seq75 Length=6520592 Score = 91.5 bits (100), Expect = 1e-13 Identities = 155/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 107550 TTTAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGG-A 107608 ||| | ||||||||||| || |||||| | || ||||| ||||| ||| |||| || | Sbjct 967467 TTTCAGATGCAAATTTTCGTTAAAACTCTCACCGGCAAGACCATCACCCTCGAGGTGGAA 967526 Query 107609 GGCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGT 107668 ||| ||| || ||| | | || ||| ||||| || || ||||| | ||| Sbjct 967527 AGCT-CCGACACGATCGACAACGTTAAAGCCAAGATCCAGGACAAGGAAGGAATTCCCCC 967585 Query 107669 GGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGA 107728 ||||||||| || ||||| | ||||| || || |||| |||| || |||| || Sbjct 967586 GGATCAGCAAAGGCTTATCTTCGCGGGAAAGCAATTGGAAGACGGTCGCACGTTGGCTGA 967645 Query 107729 CTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAG 107770 |||||||| || ||||| || || | ||| |||| |||| Sbjct 967646 TTACAACATCCAGAAGGAATCCACCCTTCACTTGGTTCTGAG 967687 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| || |||||||| |||| || || || || ||| | || |||| ||| Sbjct 967701 ATGCAAATATTCGTCAAAACCCTAACCGGAAAGACAATAACCCTTGAGGTGGAGAGCTCT 967760 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | | || ||| ||||| || || || || | || ||| || Sbjct 967761 -GACACCATCGACAACGTCAAAGCCAAGATCCAGGACAAGGAGGGTATTCCACCGGACCA 967819 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| || | || | || |||||||| || ||||||| | ||| ||||||||||||| Sbjct 967820 GCAAAGGTTGATCTTCGCCGGTAAACAACTCGAGGACGGCCGAACCTTGGCGGACTACAA 967879 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||| || |||||||| || | ||| ||||| Sbjct 967880 CATCCAGAAGGAGTCAACCCTTCACTTGGTG 967910 >seq101 Length=14560423 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||||||||| || || ||||| || || || ||||| || | ||| |||| ||| Sbjct 1861257 ATGCAAATTTTCGTGAAGACTTTGACCGGGAAGACCATCACTCTGGAAGTGGAGAGCT-C 1861315 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| | | | | || || || ||| || || ||||| | || ||| || Sbjct 1861316 CGATACCATTGACAATGTGAAGGCCAAAATTCAAGACAAGGAAGGTATCCCACCGGACCA 1861375 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | || ||||| ||||| ||||| | ||| ||||||||||||| Sbjct 1861376 GCAGCGTCTCATCTTCGCTGGTAAGCAGCTCGAGGATGGTCGCACACTGGCGGACTACAA 1861435 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||| || |||||||| || | ||| |||| Sbjct 1861436 CATCCAGAAGGAGTCGACTCTCCACTTGGT 1861465 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/212 (69%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 ||||||||| || ||||| ||| | || || || ||||| || | ||| || ||| Sbjct 13329205 AATGCAAATCTTCGTCAAGACTCTCACCGGAAAGACCATCACTCTTGAAGTTGAAAGCTC 13329264 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 || || | | | | || ||| |||||| || |||||||| | || ||||| Sbjct 13329265 T-GACACCATTGACAACGTTAAAGCTAAGATTCAAGACAAAGAAGGTATTCCTCCGGATC 13329323 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 |||| |||||||| | || ||||| || || || || | | ||| | || ||||||| Sbjct 13329324 AGCAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGATGGAAGAACTCTCGCTGACTACA 13329383 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 |||| ||||||||||| || | || ||||| Sbjct 13329384 ACATCCAAAAGGAGTCCACTCTCCATTTGGTG 13329415 >seq139 Length=20634497 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || |||||||| || || || || || ||||| || | || |||| ||| | Sbjct 14478028 ATGCAGATATTTGTCAAGACGTTGACGGGTAAGACCATAACACTTGAGGTGGAGAGCTCG 14477969 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | | ||||| |||||| || |||||||| | || ||| || Sbjct 14477968 -GATACGATTGACAATGTAAAGGCGAAGATTCAGGACAAAGAAGGGATCCCTCCGGACCA 14477910 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||||| || | ||| || |||||||| ||||| | | ||||||| ||||| Sbjct 14477909 ACAGAGACTAATCTTTGCCGGAAAACAGCTCGAGGATGGTCGCGCTTTGGCGGATTACAA 14477850 Query 107735 CATTCAAAAGGAGTCTAC 107752 |||||| || ||||| || Sbjct 14477849 CATTCAGAAAGAGTCAAC 14477832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398876022190240