Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq92 116 6e-21 seq64 91.5 2e-13 seq126 84.2 3e-11 >seq92 Length=17487894 Score = 116 bits (128), Expect = 6e-21 Identities = 127/169 (75%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || |||||| | ||||| ||| ||| || ||| || ||||| || || || |||||| Sbjct 10601198 GACACTATTGACAATGTTAAAGCTAAGATTCAAGACAAGGAAGGGATCCCTCCGGATCAA 10601139 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 ||||||||||| ||||| ||||||||| | || ||| | | || || ||||||| ||| Sbjct 10601138 CAAAGACTCATCTTTGCCGGTAAACAACTTGAGGATGGTCGTACATTGGCAGATTACAAT 10601079 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 || ||||| || |||||| |||| || || | | || ||||| |||| Sbjct 10601078 ATTCAAAAGGAGTCGACTCTCCACTTGGTTCTTAGGTTGAGAGGTGGTA 10601030 Score = 100 bits (110), Expect = 4e-16 Identities = 142/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGA-ACATAAC 146090 |||| ||||| | ||||| | || || ||||| ||||| | || || || | | | Sbjct 10601029 TGCAGATATTTGTGAAAACCCTCACCGGTAAAACCATTACCCTAGAAGTGGAGAGCTCA- 10600971 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || |||||| | || || ||| ||| || ||| || ||||| || || || |||||| Sbjct 10600970 GACACTATTGACAACGTTAAAGCTAAGATTCAAGACAAGGAAGGGATCCCTCCGGATCAA 10600911 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || |||||||| || |||||||||||| | || ||| | ||||| | ||||||| || Sbjct 10600910 CAGAGACTCATCTTCGCAGGTAAACAACTTGAGGATGGTCGAACGCTTGCAGATTACAAC 10600851 Query 146211 ATACAAAAAGAATCGAC 146227 || || || ||||| || Sbjct 10600850 ATCCAGAAGGAATCAAC 10600834 Score = 96.9 bits (106), Expect = 5e-15 Identities = 157/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || | ||||| || || ||||| | || || ||| | Sbjct 12099586 TGCAAATCTTCGTTAAGACTCTTACAGGGAAGACCATTACCTTAGAAGTTGAAAGCTCAG 12099645 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | || ||||| ||| || ||| ||||||||| || || || ||||||| Sbjct 12099646 ACACAATAGACAACGTAAAGGCTAAGATTCAAGATAAAGAAGGAATCCCTCCAGATCAAC 12099705 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||| || ||||| ||||||||| | || ||| | | || || | ||||| || | Sbjct 12099706 AAAGACTTATCTTTGCTGGTAAACAACTTGAGGATGGTCGTACATTGGCTGATTACAACA 12099765 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | ||||||| || ||| | || || || | | || ||||| || Sbjct 12099766 TCAAAAAAGAGTCAACTCTTCACTTGGTTCTTAGGTTGAGAGGTGG 12099811 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 146033 GCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACGA 146092 |||||| ||| |||| || | ||| | || ||||| || | || || ||| ||| Sbjct 12099359 GCAAATCTTCGTAAAGACTCTCACAAGCAAGACAATAACCTTGGAGGTTGAAACCTCCGA 12099418 Query 146093 TACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACA 146152 || ||| | || || || || || ||| || ||||| ||||| | || ||||| Sbjct 12099419 CACAATTGAGAACGTCAAGGCAAAGATCCAAGACAAGGAAGGAATTCCTTCAGACCAACA 12099478 Query 146153 AAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATAT 146212 |||||| || |||| || ||||||||||| ||| | || || | || || ||||| Sbjct 12099479 AAGACTTATCTTTGTCGGCAAACAATTAGAAGATGGACGTACTTTGAATGAATACAATAT 12099538 Query 146213 ACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 ||||| ||||| ||| |||| || || | || || ||||| |||| Sbjct 12099539 CCAAAAGGAATCAACTCTCCACTTGGTCCTGCGTTTGAGAGGTGGTA 12099585 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 146114 TAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAA 146173 ||| || ||| ||||||||| || || || || ||||||||||| || ||||| ||||| Sbjct 10601403 TAAGATTCAAGATAAAGAAGGAATCCCTCCAGACCAACAAAGACTTATCTTTGCTGGTAA 10601344 Query 146174 ACAATTAGATGATAATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCA 146233 |||| | || ||| | | || || | ||||| || || |||||||| || || |||| Sbjct 10601343 ACAACTCGAGGATGGTCGTACATTGTCGGATTACAACATCCAAAAAGAGTCAACGCTCCA 10601284 Query 146234 TTTAGTATTACGATTAAGAGGAGGTA 146259 || || | | || ||||| |||| Sbjct 10601283 CTTGGTTCTTAGGTTGAGAGGTGGTA 10601258 >seq64 Length=9524166 Score = 91.5 bits (100), Expect = 2e-13 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||||| || || | || |||||||| |||||| | || || ||| | Sbjct 3905541 TGCAGATTTTCATCAAGACCCTCACCGGAAAAACCATTACTTTGGAAGTGGAAAGCTCAG 3905600 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | || || || ||| ||||| || ||||| || |||| || || | Sbjct 3905601 ACACGATTGATAACGTGAAGGCTAAGATACATGACAAGGAAGGGATCCCACTTGACCAGC 3905660 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||||||||| | || ||||| | || ||| | |||| || | ||||| |||| Sbjct 3905661 AAAGACTCATTTTCGGTGGGAAACAGCTTGAGGATGGTCGAACTTTGGCTGATTACAATA 3905720 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | || || ||||||||| | || || || Sbjct 3905721 TTCAGAAGGAATCGACTCTTCACTTGGT 3905748 >seq126 Length=8766530 Score = 84.2 bits (92), Expect = 3e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||||||||| | ||||| |||| || ||||||||||| | || || || | Sbjct 5178211 TGCAAATATTTGTGAAAACCCTAACTGGTAAAACAATTACCTTAGAAGTTGAGAGCTCGG 5178152 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | || || || || || ||| || ||||| || || || || |||| Sbjct 5178151 ACACGATTGACAACGTCAAGGCGAAGATTCAAGACAAGGAAGGAATCCCTCCGGACCAAC 5178092 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | |||||||| || || |||||||| | || ||| | | || | |||||||||||| Sbjct 5178091 AGAGACTCATCTTCGCTGGTAAACAGCTTGAGGATGGTCGCACTCTTGCAGATTATAATA 5178032 Query 146212 TACAAAAAGAATCGAC 146227 | || || ||||| || Sbjct 5178031 TTCAGAAGGAATCAAC 5178016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786164827667200