Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq139 104 2e-17 seq101 104 2e-17 seq92 102 8e-17 seq72 98.7 1e-15 seq75 91.5 1e-13 >seq139 Length=20634497 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GC 137242 ||| || || | ||| | || | ||||| ||||| || ||||| ||||||||||| || Sbjct 11242465 GCCACCACGAAGACGAAGGACAAGATGAAGCGTAGACTCCTTTTGGATGTTGTAATCAGC 11242406 Query 137243 TCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 137302 | | || | ||||| |||||||| || ||| |||||| | ||||||||| |||| Sbjct 11242405 TAAG-GTCCGGCCATCTTCTAGTTGTTTTCCGGCAAAGATCAATCTTTGCTGATCCGGAG 11242347 Query 137303 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTA 137362 | || ||||| ||||| || ||| || | | || | ||||| | | || | Sbjct 11242346 GAATCCCTTCCTTGTCCTGGATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTCTCAA 11242287 Query 137363 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 | || | ||| | ||||| || |||| |||||| |||||||||||||| Sbjct 11242286 CCTCGAGAGTGATGGTCTTTCCAGTCAGTGTTTTCACGAATATTTGCAT 11242238 Score = 102 bits (112), Expect = 8e-17 Identities = 157/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || |||| ||||||| ||| || || | || || | ||||| ||||||||||| | Sbjct 14478485 CCACCTCTCAAACGCAGAACCAAGTGGAGAGTTGACTTCTTTTGAATGTTGTAATCTGCC 14478544 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||| | ||||| |||||||| || ||| ||||||| | |||||| || | || Sbjct 14478545 AATGTACGACCATCTTCAAGTTGTTTGCCGGCAAAGATCAGTCTTTGCTGGTCTGAAGAA 14478604 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 |||||||||||||| || ||| || | | |||||| ||||| | ||| || Sbjct 14478605 ATGCCTTCTTTGTCCTGGATCTTTGCCTTGACGTTTTCCACTGTGTCGGAACTTTCGACC 14478664 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTG 137408 || | || | |||||||| || | || |||||||| ||||| Sbjct 14478665 TCTAAGGTTATGGTCTTGCCCGTGAGAGTCTTTACGAAGATTTG 14478708 >seq101 Length=14560423 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | || ||||| | || || || ||||| |||||||| || Sbjct 13329432 CCACCACGAAGACGAAGCACCAAATGGAGAGTGGACTCCTTTTGGATGTTGTAGTCAGCG 13329373 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || ||||| ||||| |||||||| |||| || | ||||||||| ||||| Sbjct 13329372 AGAGTTCTTCCATCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGCTGATCCGGAGGA 13329313 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||||||||| ||| || ||| | | || | ||||| | | ||| ||| Sbjct 13329312 ATACCTTCTTTGTCTTGAATCTTAGCTTTAACGTTGTCAATGGTGTCAGAGCTTTCAACT 13329253 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| ||| | ||||| ||||| | || || ||||| |||||||| Sbjct 13329252 TCAAGAGTGATGGTCTTTCCGGTGAGAGTCTTGACGAAGATTTGCAT 13329206 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||||| || ||| | || ||||||| |||||||| || || |||||||||||| Sbjct 13329204 CCTCCTCTTAGACGGAGGACCAAATGAAGGGTAGATTCCTTCTGGATGTTGTAATCGGCT 13329145 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | ||||| | ||||| || || |||||| | ||||||||| ||||| Sbjct 13329144 AAAGTACGGCCATCTTCCAACTGTTTTCCGGCGAAGATCAATCTTTGCTGATCCGGAGGA 13329085 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| ||||| || ||| || | | || | ||||| | | || || Sbjct 13329084 ATTCCTTCCTTGTCTTGGATCTTTGCCTTAACGTTGTCGATGGTGTCAGAGCTCTCGACC 13329025 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | ||| | |||||||| || | ||||| ||||| |||||||| Sbjct 13329024 TCGAGAGTGATGGTCTTGCCAGTGAGAGTTTTCACGAAGATTTGCAT 13328978 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | |||||| || || |||| || ||||| || || |||||||| ||| Sbjct 1861255 CCACCACGGAGACGCAACACCAAGTGAAGGGTTGATTCCTTCTGAATGTTGTAGTCGGCT 1861196 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | |||| || || || || || || || |||| ||||| |||||||| ||||| Sbjct 1861195 AAGGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAGATAAGACGCTGCTGATCCGGAGGG 1861136 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| || || || || || | | || | ||||||| | || || Sbjct 1861135 ATACCTTCCTTATCCTGGATCTTGGCCTTCACGTTGTCGATTGTGTCTGAGCTCTCCACC 1861076 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| ||| | ||||||||||| | || || ||||| |||||||| Sbjct 1861075 TCAAGAGTAATTGTCTTGCCGGTAAGGGTCTTCACGAAGATTTGCAT 1861029 >seq92 Length=17487894 Score = 102 bits (112), Expect = 8e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 137202 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 137261 ||| || |||| || || ||||||| ||||||||||| || ||| | || || Sbjct 12099794 AACCAAGTGAAGAGTTGACTCTTTTTTGATGTTGTAATCAGCCAATGTACGACCATCCTC 12099735 Query 137262 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 137321 ||||||||||||||| |||| || | ||| ||||| ||||| || |||||||| || Sbjct 12099734 AAGTTGTTTACCAGCAAAGATAAGTCTTTGTTGATCTGGAGGGATTCCTTCTTTATCTTG 12099675 Query 137322 AATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTT 137381 ||| || |||| | || | ||||||| | ||| ||||| | || | ||||| Sbjct 12099674 AATCTTAGCCTTTACGTTGTCTATTGTGTCTGAGCTTTCAACTTCTAAGGTAATGGTCTT 12099615 Query 137382 GCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || || | || || ||||| ||||||||| Sbjct 12099614 CCCTGTAAGAGTCTTAACGAAGATTTGCATA 12099584 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 137202 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 137261 ||| || || | || || |||||||| ||||||||||| || ||| | || || Sbjct 10601277 AACCAAGTGGAGCGTTGACTCTTTTTGGATGTTGTAATCCGACAATGTACGACCATCCTC 10601336 Query 137262 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 137321 |||||||||||||||| |||| || | ||| || || ||||| || |||||||| || Sbjct 10601337 GAGTTGTTTACCAGCAAAGATAAGTCTTTGTTGGTCTGGAGGGATTCCTTCTTTATCTTG 10601396 Query 137322 AATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTT 137381 ||| || || | | || | ||||||| | ||| ||||| | || | ||||| Sbjct 10601397 AATCTTAGCCTTGACGTTGTCTATGGTGTCTGAGCTTTCAACTTCTAGGGTTATGGTCTT 10601456 Query 137382 GCCGGTCAATGTTTTTACGAATATTTGCATA 137412 ||||| | || || || || ||||||||| Sbjct 10601457 CCCGGTAAGAGTCTTAACAAAGATTTGCATA 10601487 >seq72 Length=2807273 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || |||| |||||| || || |||| || || || || || ||||| || || | Sbjct 226586 CCACCACGTAGACGCAACACCAAGTGAAGGGTCGACTCCTTCTGAATGTTATAGTCAGCC 226645 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | |||| || |||||||| || |||||| |||| ||||| |||||||| ||||| Sbjct 226646 AAGGTGCGACCATCCTCGAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGATCCGGAGGG 226705 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| || || ||| || || | | || | ||||||| | || || Sbjct 226706 ATACCTTCCTTATCCTGAATCTTGGCCTTCACGTTGTCGATTGTGTCTGAGCTCTCCACC 226765 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | ||| | ||||||||||| | ||| || ||||| || ||||| Sbjct 226766 TCCAGAGTAATGGTCTTGCCGGTAAGTGTCTTGACGAAAATCTGCAT 226812 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 |||||| || | |||||| || || |||| || || || || || ||||||||||| Sbjct 226813 GCCTCCACGAAGACGCAAGACCAAGTGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGC 226872 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || || | |||||| | ||| || || || |||||| | |||||| || || || Sbjct 226873 CAAGGTACGGCCGTCTTCCAATTGCTTTCCGGCGAAGATCAATCTTTGCTGGTCCGGTGG 226932 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || ||||| ||||| ||||| ||| | | || | |||||||| | || || Sbjct 226933 GATACCTTCCTTGTCTTGGATTTTAGCTTTGACATTGTCGATCGTGTCTGAGCTCTCAAC 226992 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 ||| | || | || ||||| ||||| || || ||||| || |||||| Sbjct 226993 TTCCAAGGTGATGGTTTTGCCAGTCAACGTCTTCACGAAGATCTGCATA 227041 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | || ||||||| || || || || || |||||||| ||| Sbjct 226358 CCACCACGGAGACGGAGGACCAAATGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCT 226417 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | |||| || |||||||| || ||||| |||| ||||| ||||| || || || Sbjct 226418 AAGGTGCGACCATCCTCGAGTTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCCGGTGGG 226477 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||||||||| || || || | | || | ||||| | | || ||| Sbjct 226478 ATACCTTCTTTGTCCTGGATCTTGGCCTTCACGTTGTCAATGGTGTCCGAGCTCTCCACT 226537 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | ||| | |||||| || ||||| || || ||||| || |||||| Sbjct 226538 TCCAAAGTGATCGTCTTCCCTGTCAAAGTCTTAACGAAAATCTGCATA 226585 >seq75 Length=6520592 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 137199 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 137258 || ||| || |||| || ||||| || || ||||||||||| || |||| ||| Sbjct 967685 CAGAACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCAGCCAACGTGCGACCGTC 967626 Query 137259 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 137318 ||| | ||| || || || |||| || | ||||||||| || || || ||||| ||||| Sbjct 967625 TTCCAATTGCTTTCCCGCGAAGATAAGCCTTTGCTGATCCGGGGGAATTCCTTCCTTGTC 967566 Query 137319 GGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGT 137378 || || ||| | | || | |||||| | | ||| || || | || | || Sbjct 967565 CTGGATCTTGGCTTTAACGTTGTCGATCGTGTCGGAGCTTTCCACCTCGAGGGTGATGGT 967506 Query 137379 CTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||||||||| | ||||| ||||| |||||||| Sbjct 967505 CTTGCCGGTGAGAGTTTTAACGAAAATTTGCAT 967473 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| || | ||| | || || |||| || || || || || |||||||| || | Sbjct 967927 CCTCCACGGAGACGAAGCACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCCGCC 967868 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | ||| |||||||||||||| || |||||| | |||||| || || || Sbjct 967867 AAGGTTCGGCCGTCCTCGAGTTGTTTACCGGCGAAGATCAACCTTTGCTGGTCCGGTGGA 967808 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || || || ||||| || || ||| | | || | ||||| | | || || Sbjct 967807 ATACCCTCCTTGTCCTGGATCTTGGCTTTGACGTTGTCGATGGTGTCAGAGCTCTCCACC 967748 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 |||| || | ||||| ||||| | ||||| ||||||||||||||| Sbjct 967747 TCAAGGGTTATTGTCTTTCCGGTTAGGGTTTTGACGAATATTTGCATA 967700 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCT 137243 || |||| || ||| | || || |||| || || || || || |||||||| || ||| Sbjct 968155 CCACCTCTTAGACGGAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCT 968096 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | | | | |||||||| || || || || |||||| | ||||| || ||||| Sbjct 968095 AAAGTTCGGCCA-TCTTCGAGCTGCTTTCCTGCGAAGATCAATCTCTGCTGGTCCGGAGG 968037 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || ||||| ||||| ||| || ||||| | || | ||||||| | ||| || Sbjct 968036 GATACCTTCCTTGTCTTGAATCTTGGCTTTTACGTTATCGATGGTGTCTGAGCTTTCAAC 967977 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 137415 || | || | |||||||||||||| || || || || || |||||| || Sbjct 967976 CTCCAGGGTGATTGTCTTGCCGGTCAACGTCTTGACAAAGATCTGCATACCT 967925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488543022912000