Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq115 120 2e-22 seq80 113 3e-20 seq75 111 1e-19 seq47 111 1e-19 seq72 96.9 2e-15 seq101 93.3 3e-14 seq139 89.7 3e-13 seq64 86.0 4e-12 >seq115 Length=22393718 Score = 120 bits (132), Expect = 2e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | | ||| | |||| ||| ||||| || || || |||||||| || | Sbjct 21774128 CACCACCACGGAGACGGAGAACCAGATGAAGAGTTGATTCCTTCTGGATGTTGTAGTCAG 21774069 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 ||| || || |||| || | ||||||||||| |||||||| ||||||||||| | | Sbjct 21774068 CGAGGGTTCGGCCGTCTTCGAGCTGTTTTCCGGCGAAAATCAATCGCTGCTGATCCGGTG 21774009 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||||| ||||| || ||| | || |||| ||| | |||||| |||||| Sbjct 21774008 GGATTCCTTCCTTGTCTTGGATCTTC-GCTTTGACATTGTCGATGGTGTCAGATGATTCG 21773950 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | ||||| || || || |||| ||||| || ||||||||||| Sbjct 21773949 ACCTCGAGTGTGATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 21773900 >seq80 Length=21647715 Score = 113 bits (124), Expect = 3e-20 Identities = 167/233 (72%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | |||||||| |||||| ||| ||||| |||||||| || | Sbjct 2366789 ACCACCACGAAGACGGAGAACCAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGC 2366730 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || | | |||| || | || || | ||||| || | | |||||||||| | || Sbjct 2366729 GAGAGTCCTTCCGTCTTCAAGCTGCTTCCTAGCAAAGATGAGCCTCTGCTGATCTGGTGG 2366670 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGAT---T 33697 | || |||||||| ||| || || || ||||| |||| |||||| ||| | Sbjct 2366669 GATTCCCTCTTTGTCCTGAATCTT-TGCTTTAACATTGTCAATGGTGTC---TGAGCTCT 2366614 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || | ||||| |||||||| || | ||| || ||||||||||||||| Sbjct 2366613 CAACTTCCAAAGTGATGGTTTTACCAGTGAGCGTCTTCACAAAGATCTGCATA 2366561 Score = 89.7 bits (98), Expect = 3e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| ||||| || |||||||| | ||||||||| | || || |||| ||||| ||||| Sbjct 2366525 CTCCTTTTGAATATTGTAATCAGCGAGTGTGCGACCATCCTCTCATTGCTTTCCAGCAAA 2366466 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 || | | ||||||||| | || | ||||||||||| ||| || | || |||| Sbjct 2366465 GATAAGTCTCTGCTGATCCGGAGGGATTCCTTCTTTGTCCTGAATCTT-AGCTTTGACAT 2366407 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 ||| | ||| || ||| || || | ||||| ||||| || |||| || || | Sbjct 2366406 TGTCAATGGTATCAGAACTTTCAACTTCTAGTGTGATGGTTTTGCCAGTTAGAGTCTTGA 2366347 Query 33737 CAAAGATCTGCAT 33749 ||||||| ||||| Sbjct 2366346 CAAAGATTTGCAT 2366334 >seq75 Length=6520592 Score = 111 bits (122), Expect = 1e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || |||||||| |||| ||| |||||| |||| || | || |||||||| || Sbjct 2456200 CTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGTCCGTCTTCGAGCTGCTTTCCGGCGAA 2456259 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 |||||| |||||||| || | || | ||||| ||||| || ||| || | ||| Sbjct 2456260 AATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATCTTCGCCTTGA-CAT 2456318 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 ||| | ||||||| || || || || | ||||| || ||||| |||| ||||| | Sbjct 2456319 TGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATTGTCTTACCCGTTAGGGTTTTCA 2456378 Query 33737 CAAAGATCTGCAT 33749 | ||||||||||| Sbjct 2456379 CGAAGATCTGCAT 2456391 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/232 (68%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| | ||| | ||||| || || || ||| || || |||||||| || | Sbjct 968156 ACCACCTCTTAGACGGAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGC 968097 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || || | || || | || ||||| || || ||||| | |||||| || | || Sbjct 968096 TAAAGTTCGGCCATCTTCGAGCTGCTTTCCTGCGAAGATCAATCTCTGCTGGTCCGGAGG 968037 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGA---TTC 33698 | |||||| ||||| ||| || ||| | || | |||||| ||| ||| Sbjct 968036 GATACCTTCCTTGTCTTGAATCTTGGCTTTTACGTTATCGATGGTGTC---TGAGCTTTC 967980 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || || | ||||| || || || || ||||| || ||||||||||||||| Sbjct 967979 AACCTCCAGGGTGATTGTCTTGCCGGTCAACGTCTTGACAAAGATCTGCATA 967928 >seq47 Length=18124089 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||||| ||| | |||||||| || || || || || ||||||||||||| | Sbjct 4075165 CCTCCTCTCAGACGGAGAACCAAATGGAGCGTCGATTCCTTCTGGATGTTGTAATCGGCG 4075224 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| | | | || |||||||| || ||||| ||||||| |||||| ||||| | || Sbjct 4075225 AGTGTCCTTCCATCCTCCAATTGCTTCCCGGCGAAAATCAGACGCTGTTGATCCGGTGGG 4075284 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| || || || ||| ||| |||| ||| | || ||| ||||| || Sbjct 4075285 ATTCCTTCCTTATCCTGGATCTTCGCCTTC-ACATTGTCGATTGTATCGGAGGATTCGAC 4075343 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | || || || || || |||| ||||| || || |||||||| Sbjct 4075344 CTCTAGGGTTATTGTCTTTCCGGTTAGGGTTTTCACGAATATCTGCAT 4075391 >seq72 Length=2807273 Score = 96.9 bits (106), Expect = 2e-15 Identities = 163/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | |||||||| ||||| ||| || || |||||||| |||| Sbjct 226357 ACCACCACGGAGACGGAGGACCAAATGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGC 226416 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||||| | || || | ||| ||||| || || || | ||||||||| || | || Sbjct 226417 TAAGGTGCGACCATCCTCGAGTTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCCGGTGG 226476 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGAT-TCC 33699 | |||||||||||| || || ||| || | ||| | |||||| | | | ||| Sbjct 226477 GATACCTTCTTTGTCCTGGATCTTGGCCTTC-ACGTTGTCAATGGTGTC-CGAGCTCTCC 226534 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || || | |||||||| || ||||| || || || || || ||||||||| Sbjct 226535 ACTTCCAAAGTGATCGTCTTCCCTGTCAAAGTCTTAACGAAAATCTGCATA 226585 Score = 95.1 bits (104), Expect = 8e-15 Identities = 156/221 (71%), Gaps = 8/221 (4%) Strand=Plus/Plus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| || ||||| || || || ||| || || ||||||||||| | | || || | Sbjct 226825 ACGCAAGACCAAGTGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGCCAAGGTACGGCC 226884 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 ||| |||||||| |||||||| || ||||| | ||||| || | || | |||||| || Sbjct 226885 GTCTTCCAATTGCTTTCCGGCGAAGATCAATCTTTGCTGGTCCGGTGGGATACCTTCCTT 226944 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTCCACGTCAACCG 33709 ||| ||||| | || |||| ||| | ||||| ||| || || || | | Sbjct 226945 GTCTTGGATTTT-AGCTTTGACATTGTCGATCGTGTCTGAGCT---CTCAACTTCCAAGG 227000 Query 33710 TGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||| ||||| || || ||||| || || |||||||||||| Sbjct 227001 TGATGGTTTTGCCAGTCAACGTCTTCACGAAGATCTGCATA 227041 >seq101 Length=14560423 Score = 93.3 bits (102), Expect = 3e-14 Identities = 162/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||||||| |||||| ||| ||||| |||||||| || | Sbjct 13329433 ACCACCACGAAGACGAAGCACCAAATGGAGAGTGGACTCCTTTTGGATGTTGTAGTCAGC 13329374 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || | | | || || | ||| || || || || || | | |||||||| | || Sbjct 13329373 GAGAGTTCTTCCATCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGCTGATCCGGAGG 13329314 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | |||||||||||| ||| || | || ||| | ||| | |||||| ||| || Sbjct 13329313 AATACCTTCTTTGTCTTGAATCTT-AGCTTTAACGTTGTCAATGGTGTCAGAGCT---TT 13329258 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || |||| ||||| || || || || | || || || ||||| ||||| Sbjct 13329257 CAACTTCAAGAGTGATGGTCTTTCCGGTGAGAGTCTTGACGAAGATTTGCAT 13329206 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||| | ||| | |||||||| || || || || || ||||||||||||| Sbjct 13329204 CCTCCTCTTAGACGGAGGACCAAATGAAGGGTAGATTCCTTCTGGATGTTGTAATCGGCT 13329145 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || || | || ||||| ||||||||||| || ||||| | |||||||| | || Sbjct 13329144 AAAGTACGGCCATCTTCCAACTGTTTTCCGGCGAAGATCAATCTTTGCTGATCCGGAGGA 13329085 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTC 33698 | ||||| ||||| || || || | ||| | ||| | |||||| ||| || Sbjct 13329084 ATTCCTTCCTTGTCTTGGATCTT-TGCCTTAACGTTGTCGATGGTGTCAGAGCT---CTC 13329029 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | ||||| || || || || | ||||| || ||||| ||||| Sbjct 13329028 GACCTCGAGAGTGATGGTCTTGCCAGTGAGAGTTTTCACGAAGATTTGCAT 13328978 >seq139 Length=20634497 Score = 89.7 bits (98), Expect = 3e-13 Identities = 163/235 (69%), Gaps = 8/235 (3%) Strand=Plus/Minus Query 33519 GTCACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATC 33578 ||| ||||| | | ||| ||||||||||| |||||| |||||| || || |||||||| Sbjct 11242696 GTCTCCACCACGAAGACGCAACACCAAATGGAGAGTGGACTCTTTCTGGATATTGTAATC 11242637 Query 33579 GGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTG 33638 || || ||||| | || || | || || || || || || | | ||||| ||| | Sbjct 11242636 GGCAAGCGTGCGACCATCTTCAAGCTGCTTACCAGCGAATATAAGTCTTTGCTGGTCTGG 11242577 Query 33639 CGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTG 33694 || | || |||||||| || || |||| |||| || | |||||| ||| Sbjct 11242576 AGGGATTCCCTCTTTGTCCTGGATCTTGGCTTTC-ACATTATCGATGGTGTCTGAGCT-- 11242520 Query 33695 ATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || || | ||||| |||||||| || | || || |||||||| ||||| Sbjct 11242519 -CTCAACCTCCAAGGTGATAGTTTTACCAGTCAGAGTCTTCACAAAGATTTGCAT 11242466 Score = 82.4 bits (90), Expect = 5e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||||||||| | ||||| || ||||| || ||||| ||||||||||| | Sbjct 14478484 ACCACCTCTCAAACGCAGAACCAAGTGGAGAGTTGACTTCTTTTGAATGTTGTAATCTGC 14478543 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||| || | || || | |||||| |||||||| |||| | ||||| ||| | Sbjct 14478544 CAATGTACGACCATCTTCAAGTTGTTTGCCGGCAAAGATCAGTCTTTGCTGGTCTGAAGA 14478603 Query 33642 CACACCTTCTTTGTC 33656 | ||||||||||| Sbjct 14478604 AATGCCTTCTTTGTC 14478618 >seq64 Length=9524166 Score = 86.0 bits (94), Expect = 4e-12 Identities = 161/233 (69%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| ||||||||||||||||| ||||||||| || |||||||| | Sbjct 3905539 ACCACCACAAAGACGCAACACCAAATGTAGAGTTGACTCTTTTTGGATATTGTAATCAGC 3905480 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||||| | | |||| || | || || || | || || | | |||||| | | || Sbjct 3905479 AAGTGTCCTTCCGTCTTCAAGCTGCTTACCATCGAATATAAGTCTCTGCTGGTTCAGAGG 3905420 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | ||||| ||||| || || || | |||| || | |||||| ||| | Sbjct 3905419 GATTCCTTCCTTGTCCTGGATCTT-TGCCTTCACATTATCAATGGTGTCTGAGCT---CT 3905364 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || | ||||||||||| || ||| || || ||||||||||||||| Sbjct 3905363 CAACCTCCAAAGTGATCGTTTTCCCAGTTGGAGTCTTGACAAAGATCTGCATA 3905311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328703359027200