Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq153 589 6e-164 seq80 468 2e-127 seq90 122 3e-23 >seq153 Length=83015 Score = 589 bits (652), Expect = 6e-164 Identities = 713/961 (74%), Gaps = 10/961 (1%) Strand=Plus/Minus Query 19532 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 19591 ||||||||||| |||| |||||||| ||||||| || | || ||| || | Sbjct 52445 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAAC 52387 Query 19592 ATCTGCTTC-ATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGA 19650 || | || ||||| ||||||||||| ||||| ||||| || |||||||| || || || Sbjct 52386 TTCCGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 52327 Query 19651 ACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG 19710 ||| || || || |||||||| |||||||| || || || || ||| | |||| | Sbjct 52326 ACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCTGGTGCCATTATTCCTAC 52267 Query 19711 --CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAA 19768 | || || || || | ||||| ||||| || ||||||||| || |||||||| Sbjct 52266 TTCTGCC--GCTATTGGTTTGCACTTTTACCCGATCTGGGAAGCTGCATCCGTTGATGAA 52209 Query 19769 TGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCATCTAT 19828 ||||| |||||||| || || | |||| | || | ||||| | |||| | | Sbjct 52208 TGGCTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCT 52149 Query 19829 GCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGT 19888 ||| ||||| || |||||||||||||| | || || || ||| | ||||||||| | Sbjct 52148 TGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCT 52089 Query 19889 GTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGG 19947 ||||| || || ||||| |||||||| || |||| || ||||| | ||||||| |||| Sbjct 52088 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGT-TTTCTTGATCTACCCAATTGG 52030 Query 19948 TCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTT 20007 ||| || || || || |||| ||||||| | || ||||| ||||| ||||||| ||| | Sbjct 52029 TCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGAT 51970 Query 20008 GGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGG 20067 |||||||| || || || |||||||| |||||||| || |||||| | ||||| ||||| Sbjct 51969 TGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGG 51910 Query 20068 TGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTG- 20126 ||||||||| || || ||||| ||||| ||||| ||||| |||| || | || | ||| Sbjct 51909 TGTATTCGGCGGTTCCCTATTTAGTGCTATGCATGGTTC-CTTGGTAACTTCTAGTTTGA 51851 Query 20127 TGCGTGAGACTACTGAACAGGAAAGTCAGAACTATGGTTACAAGTTTGGGCAAGAAGAAG 20186 | | || || || ||| | ||| | || | ||||||| || || |||||||||| Sbjct 51850 TCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAG 51791 Query 20187 AGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGCTT 20246 | || || ||||| ||||| ||||| ||||| ||||| || |||||||||||||| ||| Sbjct 51790 AAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCTA 51731 Query 20247 CTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTT 20306 ||||||||| ||||||| |||| |||||| | || || |||||||| ||||| |||| Sbjct 51730 GTTTCAACAACTCCCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTT 51671 Query 20307 GGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAACTTTAACC 20366 |||| |||| || || || || ||||| || || || || |||||||| || |||| Sbjct 51670 GGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACC 51611 Query 20367 AGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTG 20426 | || | | || | | || ||||| ||| ||||||||||||| ||| | || |||| Sbjct 51610 AATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATTAACCGTG 51551 Query 20427 CTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATAACTTCCCACTTGACCTTG 20486 |||| || || | || || ||||||||||| |||||||| |||||||| || ||||| | Sbjct 51550 CTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAG 51491 Query 20487 C 20487 | Sbjct 51490 C 51490 >seq80 Length=21647715 Score = 468 bits (518), Expect = 2e-127 Identities = 681/954 (71%), Gaps = 6/954 (1%) Strand=Plus/Plus Query 19532 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 19591 ||||||||||| |||| |||||||| | |||| || | || ||| | || | Sbjct 17113474 AACCGTCTTTACATTGGATGGTTTGGTGTTTTAGTGATCCC-TACCTTATTGAACGCAAC 17113532 Query 19592 ATCTGCTTC-ATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGA 19650 || | || ||||| |||||||||| | ||| | ||| || |||||||| || | || Sbjct 17113533 TTCCGTTTTTATTATCGCATTCATTGTTGTTCCTCTAGTAGATATTGATGGTATTTGTGA 17113592 Query 19651 ACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG 19710 ||| || || | |||||||| |||||||| || || || || | | | |||| | Sbjct 17113593 ACCTGTTTCTAGATCTCTTCTTTACGGAAACAATATTATTTCTGGTGTCATTATTCCTAC 17113652 Query 19711 CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAATG 19770 || || || | ||||| ||||| || | ||||||| || |||||||||| Sbjct 17113653 TTATGTCGCTATTGGTTTGCACTTTTACCCGATCTAGGAAGCTGCATCCGTTGATGAATG 17113712 Query 19771 GCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCATCTATGC 19830 ||| |||||||| | | | |||| | || | ||||| | |||| | | Sbjct 17113713 GCTATACAACGGTTGTCTTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTG 17113772 Query 19831 TTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGT 19890 ||| ||||| || |||||||||||||| | | || || || | |||||||||| ||| Sbjct 17113773 TTATATGGGTCGTGAGTGGGAACTTAGTTTCTGTCTGGGTGTGCGTCCTTGGATTTTTGT 17113832 Query 19891 TGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGGTC 19949 ||| || || ||||| |||||||| || |||| || ||||| | |||||| || ||| Sbjct 17113833 TGCATATTCAGCTCCAGTTGCAGCTGCTACTGCTGT-TTTCTTGAACTACCCAATTTGTC 17113891 Query 19950 AGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGG 20009 | || || || | |||| ||||||| | | ||||| ||||| ||||||| ||| | | Sbjct 17113892 AAGGAAGTTTTTATGATGGTATGCCTCTATGAATCTCTGGTACTTTCAACTTTATGATTG 17113951 Query 20010 TATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTG 20069 ||||| | || || || |||||||| |||||||| || |||||| | ||||| ||||||| Sbjct 17113952 TATTCTAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTG 17114011 Query 20070 TATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTG-TG 20128 ||||||| || || ||||| ||||| ||||| ||||| ||| || | || | ||| | Sbjct 17114012 TATTCGGCGGTTCCCTATTTAGTGCTATGCATGGTTC-TTTGGTAACTTCTAGTTTGATC 17114070 Query 20129 CGTGAGACTACTGAACAGGAAAGTCAGAACTATGGTTACAAGTTTGGGCAAGAAGAAGAG 20188 | || || || ||| | ||| | || | ||||||| || || ||||||||| | Sbjct 17114071 AGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAAAA 17114130 Query 20189 ACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGCTTCT 20248 || || ||||| |||| ||||| | || ||||| || |||||||||||||| ||| | Sbjct 17114131 ACTTACAACATTGTAGTTGCTCACGACTATTTTGGCCGATTGATCTTCCAATATGCTAGT 17114190 Query 20249 TTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGG 20308 |||||||| ||||||| |||| |||||| | || || |||||||| |||| |||||| Sbjct 17114191 TTCAACAACTCCCGTTCTTTACATTTCTTCTTAGCAGCTTGGCCGGTAGTAGCTATTTGG 17114250 Query 20309 TTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAACTTTAACCAG 20368 || |||| || || || || ||||| || || || || ||||||| || |||| Sbjct 17114251 TTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAGTTTCAACCCA 17114310 Query 20369 TCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCT 20428 || | | || | | | ||||| ||| ||||||||||||| ||| | || |||||| Sbjct 17114311 TCAATAGTTGATAGTCAAGAACGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCT 17114370 Query 20429 AATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATAACTTCCCACTTGAC 20482 ||||| | | || || ||||||||||| |||||||| |||||||| ||| || Sbjct 17114371 AATCTTGTTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTTTAC 17114424 >seq90 Length=4948294 Score = 122 bits (134), Expect = 3e-23 Identities = 164/226 (73%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 20260 CCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTT 20319 ||||| | |||| |||||| | || || |||||||| || |||||||| |||| || Sbjct 3476972 CCGTTTTTTACATTTCTTCTTAGCGGCTTGGCCGGTAATACATATTTGGTTTACTGCTTT 3477031 Query 20320 GGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGA 20379 || || || | || || ||||| || ||||| || || ||||| || | | || Sbjct 3477032 AGGTATTAGCACTGTAGCTTTCAATCTAAATGGTTTTAATTTCAACCAATCAGTAGTTGA 3477091 Query 20380 CAA-CAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGT 20438 | ||||| ||||| ||| ||||||||| ||| ||| | ||||||||||| || || Sbjct 3477092 TAGTCAATGA-CGTGTTATTAATACTTGGGTTGATATTATTAATCGTGCTAACCTTGGTA 3477150 Query 20439 TTGAGGTGATGCATGAACGGAATGCTCATAACTTCCCACTTGACCT 20484 | || || |||||| || | |||||||| |||||||| || || || Sbjct 3477151 TGGAAGTTATGCATTAAGGTAATGCTCAAAACTTCCCTCTAGAACT 3477196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148828517225280