Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq153 560 3e-155 seq80 441 2e-119 seq90 134 4e-27 >seq153 Length=83015 Score = 560 bits (620), Expect = 3e-155 Identities = 705/961 (73%), Gaps = 8/961 (1%) Strand=Plus/Minus Query 28660 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 28719 ||||||||||| |||| |||||||| ||||||| || | || ||| || | Sbjct 52445 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAAC 52387 Query 28720 ATCTGCTTC-ATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGA 28778 || | || ||||| ||||||||||| || || ||||| || |||||||| || || || Sbjct 52386 TTCCGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 52327 Query 28779 ACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAG 28838 |||||| ||||| |||||| || |||||||| || || || || ||| | | || | Sbjct 52326 ACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCTGGTGCCATTATTCCTAC 52267 Query 28839 --CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAA 28896 | || || || || | ||||| ||||| || ||||||||| || |||||||| Sbjct 52266 TTCTGCC--GCTATTGGTTTGCACTTTTACCCGATCTGGGAAGCTGCATCCGTTGATGAA 52209 Query 28897 TGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTAT 28956 ||||| |||||||| || || | |||| | || | ||||| | |||| || | Sbjct 52208 TGGCTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCT 52149 Query 28957 GCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGT 29016 ||| ||||| || |||||||||||||| | || || || ||| | || |||||| | Sbjct 52148 TGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCT 52089 Query 29017 GTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGT 29076 || ||||| |||||||| || ||||| || |||| |||||| | |||||||| | ||| Sbjct 52088 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGT 52029 Query 29077 CAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTG 29136 ||||| |||| || | |||||| | || || || || || ||||||| ||| | Sbjct 52028 CAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATT 51969 Query 29137 GTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGA 29196 || ||||| || || || |||||||| |||||||| || |||||| | || || ||||| Sbjct 51968 GTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGT 51909 Query 29197 GTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTTGTG 29256 || ||||| || || ||||||||||| ||||| ||||| | || || || | | ||| Sbjct 51908 GTATTCGGCGGTTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTC-TAGTTTGAT 51850 Query 29257 C-GTGAGACGACTGAAGACATCTCTCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGA 29315 | | || || || ||| | ||| || | ||||||| || || ||||||||||| Sbjct 51849 CAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAGA 51790 Query 29316 GACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATATGCTTC 29375 ||||| ||||| ||||| ||||||||||| ||||| || |||||||||||||||||| Sbjct 51789 AACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCTAG 51730 Query 29376 TTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTG 29435 |||||| || ||||||| |||| |||||| | || || |||||||| ||||| ||||| Sbjct 51729 TTTCAACAACTCCCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTG 51670 Query 29436 GTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTTAACTTTAACCA 29495 ||| |||| || || || || ||||| || || || || ||||| || || ||||| Sbjct 51669 GTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCA 51610 Query 29496 GTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGC 29555 || | | || | | || ||||| |||||||||||||||||| || | || || || Sbjct 51609 ATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATTAACCGTGC 51550 Query 29556 TAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAACTTCCCACTTGATCTGGC 29615 |||||| || | ||||| |||||||| ||||||||||| |||||||| || || || || Sbjct 51549 TAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 51490 Query 29616 T 29616 | Sbjct 51489 T 51489 >seq80 Length=21647715 Score = 441 bits (488), Expect = 2e-119 Identities = 671/950 (71%), Gaps = 4/950 (0%) Strand=Plus/Plus Query 28660 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 28719 ||||||||||| |||| |||||||| | |||| || | || ||| | || | Sbjct 17113474 AACCGTCTTTACATTGGATGGTTTGGTGTTTTAGTGATCCC-TACCTTATTGAACGCAAC 17113532 Query 28720 ATCTGCTTC-ATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGA 28778 || | || ||||| |||||||||| | || | ||| || |||||||| || | || Sbjct 17113533 TTCCGTTTTTATTATCGCATTCATTGTTGTTCCTCTAGTAGATATTGATGGTATTTGTGA 17113592 Query 28779 ACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAG 28838 |||||| || || |||||| || |||||||| || || || || | | | | || | Sbjct 17113593 ACCTGTTTCTAGATCTCTTCTTTACGGAAACAATATTATTTCTGGTGTCATTATTCCTAC 17113652 Query 28839 CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATG 28898 || || || | ||||| ||||| || | ||||||| || |||||||||| Sbjct 17113653 TTATGTCGCTATTGGTTTGCACTTTTACCCGATCTAGGAAGCTGCATCCGTTGATGAATG 17113712 Query 28899 GCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGC 28958 ||| |||||||| | | | |||| | || | ||||| | |||| || | Sbjct 17113713 GCTATACAACGGTTGTCTTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTG 17113772 Query 28959 TTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGTGT 29018 ||| ||||| || |||||||||||||| | | || || || | || ||||||| ||| Sbjct 17113773 TTATATGGGTCGTGAGTGGGAACTTAGTTTCTGTCTGGGTGTGCGTCCTTGGATTTTTGT 17113832 Query 29019 CGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGTCA 29078 ||||| |||||||| || ||||| || |||| |||||| | ||||||| | |||| Sbjct 17113833 TGCATATTCAGCTCCAGTTGCAGCTGCTACTGCTGTTTTCTTGAACTACCCAATTTGTCA 17113892 Query 29079 AGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTGGT 29138 ||| |||| || | |||||| | | || || || || ||||||| ||| | || Sbjct 17113893 AGGAAGTTTTTATGATGGTATGCCTCTATGAATCTCTGGTACTTTCAACTTTATGATTGT 17113952 Query 29139 GTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGAGT 29198 ||| | || || || |||||||| |||||||| || |||||| | || || ||||| || Sbjct 17113953 ATTCTAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGT 17114012 Query 29199 GTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTTG-TGC 29257 ||||| || || ||||||||||| ||||| ||||| | || || | || | ||| | Sbjct 17114013 ATTCGGCGGTTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAAC-TTCTAGTTTGATCA 17114071 Query 29258 GTGAGACGACTGAAGACATCTCTCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAGA 29317 | || || || ||| | ||| || | ||||||| || || ||||||||| | | Sbjct 17114072 GGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAAAAA 17114131 Query 29318 CTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATATGCTTCTT 29377 |||| ||||| |||| ||||||| || ||||| || |||||||||||||||||| || Sbjct 17114132 CTTACAACATTGTAGTTGCTCACGACTATTTTGGCCGATTGATCTTCCAATATGCTAGTT 17114191 Query 29378 TCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGT 29437 |||| || ||||||| |||| |||||| | || || |||||||| |||| ||||||| Sbjct 17114192 TCAACAACTCCCGTTCTTTACATTTCTTCTTAGCAGCTTGGCCGGTAGTAGCTATTTGGT 17114251 Query 29438 TCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTTAACTTTAACCAGT 29497 | |||| || || || || ||||| || || || || ||||| | || |||| | Sbjct 17114252 TTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAGTTTCAACCCAT 17114311 Query 29498 CGCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGCTA 29557 | | | || | | | ||||| |||||||||||||||||| || | || || |||| Sbjct 17114312 CAATAGTTGATAGTCAAGAACGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTA 17114371 Query 29558 ACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAACTTCCCACTT 29607 | || | | ||||| |||||||| ||||||||||| |||||||| ||| Sbjct 17114372 ATCTTGTTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTT 17114421 >seq90 Length=4948294 Score = 134 bits (148), Expect = 4e-27 Identities = 167/226 (74%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 29388 CCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTT 29447 ||||| | |||| |||||| | || || |||||||| || |||||||| |||| || Sbjct 3476972 CCGTTTTTTACATTTCTTCTTAGCGGCTTGGCCGGTAATACATATTTGGTTTACTGCTTT 3477031 Query 29448 GGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTTAACTTTAACCAGTCGCTTCTCGA 29507 || || || | || || ||||| || |||||||| || ||||| || | | || Sbjct 3477032 AGGTATTAGCACTGTAGCTTTCAATCTAAATGGTTTTAATTTCAACCAATCAGTAGTTGA 3477091 Query 29508 CAA-CAATGGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCT 29566 | ||||| ||||| ||||||||||||| |||| || | ||||| |||||||| || Sbjct 3477092 TAGTCAATGA-CGTGTTATTAATACTTGGGTTGATATTATTAATCGTGCTAACCTTGGTA 3477150 Query 29567 TTGAAGTAATGCATGAGCGTAATGCTCATAACTTCCCACTTGATCT 29612 | ||||| |||||| | |||||||||| |||||||| || || || Sbjct 3477151 TGGAAGTTATGCATTAAGGTAATGCTCAAAACTTCCCTCTAGAACT 3477196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146665321335360