Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq153 618 1e-172 seq80 475 1e-129 seq90 134 4e-27 >seq153 Length=83015 Score = 618 bits (684), Expect = 1e-172 Identities = 730/981 (74%), Gaps = 8/981 (1%) Strand=Plus/Minus Query 18724 TTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTG 18783 || ||| ||||| ||||||| || || ||||||||||| || || |||||||| || Sbjct 52472 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 52413 Query 18784 ATGATTCCGTGTCTCCTTG-CAGCTACTATTTGTTTCATTATTGCCTTCATTGCTGCACC 18842 ||||| || | || ||| | || ||| ||| ||||| || ||||||||||| || Sbjct 52412 ATGATCCC-TACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCC 52354 Query 18843 TCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAA 18902 ||| ||||| |||||||| || || || |||||| | || ||||||||| |||||||| Sbjct 52353 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAA 52294 Query 18903 CATCATATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCA 18960 || || || || ||| | |||| | | || || || || | ||||| ||||| Sbjct 52293 TATTATTTCTGGTGCCATTATTCCTACTTCTGCC--GCTATTGGTTTGCACTTTTACCCG 52236 Query 18961 ATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTG 19020 || ||||||||| || ||||||||||||| |||||||| || || | |||| | Sbjct 52235 ATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATT 52176 Query 19021 GTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTAT 19080 || | ||||| | |||| || | ||| ||||| || |||||||||||||| | Sbjct 52175 GTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTC 52116 Query 19081 CGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCT 19140 || || || ||||| ||||||||| |||||| || |||||||||||||| || || || Sbjct 52115 CGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACT 52056 Query 19141 GCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGGGT 19200 || || ||| | |||| ||| |||||||||| ||| || | ||||||| | || Sbjct 52055 GCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGA 51996 Query 19201 ATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCAC 19260 || |||||| ||||||| ||| |||||||||||||||| || ||||| || |||||| Sbjct 51995 ATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCAC 51936 Query 19261 CCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCAC 19320 || || |||||| | ||||| |||||||| |||||||| || ||||||||||| ||||| Sbjct 51935 CCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTTAGTGCTATGCAT 51876 Query 19321 GGTTCGCTTGTTACGTCCTCGCTTG-TGCGTGAAACTACTGAAGAGGTATCTCAGAACTA 19379 ||||| |||| || | || | ||| | | ||||| || ||| | | |||| || | Sbjct 51875 GGTTC-CTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGA 51817 Query 19380 TGGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTT 19439 || |||| || || ||||||||||| ||||| |||||||| |||||||| || ||||| Sbjct 51816 AGGTTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTT 51757 Query 19440 TGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTT 19499 ||| || | || ||||| || || |||||||| ||||||| |||||||||| || Sbjct 51756 TGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCCCGTTCTTTACATTTCTTCTT 51697 Query 19500 GGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATT 19559 || |||||||| || || || ||||||||| | || | || | ||||| ||||| || Sbjct 51696 AGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTT 51637 Query 19560 CAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGA 19619 |||| | ||||| || || || ||||| || | |||| | | || ||||| ||| | Sbjct 51636 CAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAA 51577 Query 19620 TACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAA 19679 |||||||||||| ||| | || ||||||||||| || | || || ||||| |||||||| Sbjct 51576 TACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 51517 Query 19680 TGCTCATAACTTCCCACTTGA 19700 |||||| |||||||| || || Sbjct 51516 TGCTCACAACTTCCCTCTAGA 51496 >seq80 Length=21647715 Score = 475 bits (526), Expect = 1e-129 Identities = 682/956 (71%), Gaps = 4/956 (0%) Strand=Plus/Plus Query 18745 ACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCA 18804 || || ||||||||||| || || |||||||| | |||| || | || ||| | Sbjct 17113468 ACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTAGTGATCCC-TACCTTATTGAA 17113526 Query 18805 -GCTACTATTTGTTTCATTATTGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGCAT 18863 || ||| ||| ||||| || ||||||| || |||| ||||| |||||||| || Sbjct 17113527 CGCAACTTCCGTTTTTATTATCGCATTCATTGTTGTTCCTCTAGTAGATATTGATGGTAT 17113586 Query 18864 CCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGT 18923 | || |||||| | | ||||||||| |||||||| || || || || | | | | Sbjct 17113587 TTGTGAACCTGTTTCTAGATCTCTTCTTTACGGAAACAATATTATTTCTGGTGTCATTAT 17113646 Query 18924 TCCGAGCAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGA 18983 ||| | || || || | ||||| ||||| || | ||||||| || |||| Sbjct 17113647 TCCTACTTATGTCGCTATTGGTTTGCACTTTTACCCGATCTAGGAAGCTGCATCCGTTGA 17113706 Query 18984 TGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGT 19043 ||||||||| |||||||| | | | |||| | || | ||||| | |||| || Sbjct 17113707 TGAATGGCTATACAACGGTTGTCTTTATGAACTAATTGTTCTACACTTTTTACTTGGTGT 17113766 Query 19044 CTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGGATGCGCCCTTGGAT 19103 | ||| ||||| || |||||||||||||| | | || || |||| |||||||| Sbjct 17113767 AGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCTGTCTGGGTGTGCGTCCTTGGAT 17113826 Query 19104 TTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTCTTCCTTGTCTATCCATT 19163 || |||||| || |||||||| ||||| || || |||| || ||| | ||| ||| | Sbjct 17113827 TTTTGTTGCATATTCAGCTCCAGTTGCAGCTGCTACTGCTGTTTTCTTGAACTACCCAAT 17113886 Query 19164 TGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGGGTATTAGTGGTACGTTCAACTACAT 19223 | ||||||| ||| || | ||||||| | | || |||||| ||||||| || Sbjct 17113887 TTGTCAAGGAAGTTTTTATGATGGTATGCCTCTATGAATCTCTGGTACTTTCAACTTTAT 17113946 Query 19224 GCTTGTATTCCAGGCTGAACATAACATCCTCATGCACCCGTTCCACATGCTCGGTGTCGC 19283 | |||||||| ||||||| || ||||| || |||||||| || |||||| | ||||| || Sbjct 17113947 GATTGTATTCTAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGC 17114006 Query 19284 TGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCT 19343 |||||| |||||||| || ||||||||||| ||||| ||||| ||| || | || | | Sbjct 17114007 TGGTGTATTCGGCGGTTCCCTATTTAGTGCTATGCATGGTTC-TTTGGTAACTTCTAGTT 17114065 Query 19344 TG-TGCGTGAAACTACTGAAGAGGTATCTCAGAACTATGGCTACAAGTTTGGGCAAGAAG 19402 || | | ||||| || ||| | | |||| || | || |||| || || ||||||| Sbjct 17114066 TGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAG 17114125 Query 19403 AAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTTGGTCGGCTTATTTTCCAGTACG 19462 || | ||||| |||||||| | |||||| | |||||||| || | || ||||| || | Sbjct 17114126 AAAAAACTTACAACATTGTAGTTGCTCACGACTATTTTGGCCGATTGATCTTCCAATATG 17114185 Query 19463 CATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTTGGCTGCTTGGCCTGTGGTTGGCA 19522 | |||||||| ||||||| |||||||||| || || |||||||| || || | | Sbjct 17114186 CTAGTTTCAACAACTCCCGTTCTTTACATTTCTTCTTAGCAGCTTGGCCGGTAGTAGCTA 17114245 Query 19523 TTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATTCAACTTGAATGGCTTTAACTTTA 19582 |||||||| | || | || | ||||| ||||| |||||| | ||||| || | || | Sbjct 17114246 TTTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAGTTTCA 17114305 Query 19583 ACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATC 19642 ||| || | |||| | | | ||||| ||| ||||||||||||| ||| | || | Sbjct 17114306 ACCCATCAATAGTTGATAGTCAAGAACGTGTTATTAATACTTGGGCTGATATTATTAACC 17114365 Query 19643 GTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAATGCTCATAACTTCCCACTT 19698 ||||||| || | | || || ||||| |||||||||||||| |||||||| ||| Sbjct 17114366 GTGCTAATCTTGTTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTT 17114421 >seq90 Length=4948294 Score = 134 bits (148), Expect = 4e-27 Identities = 165/223 (74%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 19479 CCGTTCTCTACATTTCTTTTTGGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCT 19538 ||||| | |||||||||| || || |||||||| || | ||||||||| | || | Sbjct 3476972 CCGTTTTTTACATTTCTTCTTAGCGGCTTGGCCGGTAATACATATTTGGTTTACTGCTTT 3477031 Query 19539 TGGGGTAAGCACCATGGCATTCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGA 19598 || | ||||| | || ||||| | ||||| ||||| || ||||| || | |||| Sbjct 3477032 AGGTATTAGCACTGTAGCTTTCAATCTAAATGGTTTTAATTTCAACCAATCAGTAGTTGA 3477091 Query 19599 CAA-CAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCT 19657 | ||||| ||||| ||| ||||||||| ||| ||| | |||||||||||||| || Sbjct 3477092 TAGTCAATGA-CGTGTTATTAATACTTGGGTTGATATTATTAATCGTGCTAACCTTGGTA 3477150 Query 19658 TTGAGGTAATGCACGAACGTAATGCTCATAACTTCCCACTTGA 19700 | || || ||||| || |||||||||| |||||||| || || Sbjct 3477151 TGGAAGTTATGCATTAAGGTAATGCTCAAAACTTCCCTCTAGA 3477193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141148531817280