Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq72 93.3 4e-14 seq101 89.7 5e-13 seq92 89.7 5e-13 seq80 87.8 2e-12 seq139 86.0 6e-12 seq64 82.4 7e-11 >seq72 Length=2807273 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| ||||| || | | | ||||| || |||||||| ||||| || ||| || | Sbjct 226598 CGCAACACCAAGTGAAGGGTCGACTCCTTCTGAATGTTATAGTCAGCCAAGGTGCGACCA 226657 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || ||||| || || || | | |||| |||||||| ||||| ||||| || ||||| ||| Sbjct 226658 TCCTCGAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGATCCGGAGGGATACCTTCCTTA 226717 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||| || |||| | || | || || | |||||| || | || | Sbjct 226718 TCCTGAATCTTGGCCTTCACGTTGTCGATTGTGTCTGAGCTCTCCACCTCCAGAGTAATG 226777 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 || || || || || || || | ||||||||||||| || Sbjct 226778 GTCTTGCCGGTAAGTGTCTTGACGAAAATCTGCATGCCT 226816 >seq101 Length=14560423 Score = 89.7 bits (98), Expect = 5e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| ||||| || | | |||| || || ||||||||||||||| | ||| || | Sbjct 1861243 CGCAACACCAAGTGAAGGGTTGATTCCTTCTGAATGTTGTAGTCGGCTAAGGTGCGACCA 1861184 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || || ||||| || |||| |||| |||||||| ||||| ||||| || ||||| ||| Sbjct 1861183 TCCTCAAGCTGCTTTCCGGCGAAGATAAGACGCTGCTGATCCGGAGGGATACCTTCCTTA 1861124 Query 132029 TC 132030 || Sbjct 1861123 TC 1861122 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || ||||||||||| || || || ||| |||||||| ||||| | Sbjct 1861450 GACTCCTTCTGGATGTTGTAGTCCGCCAGTGTGCGACCATCCTCGAGCTGCTTACCAGCG 1861391 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| || || || || || ||||| || || |||||| |||| Sbjct 1861390 AAGATGAGACGCTGCTGGTCCGGTGGGATACCTTCCTTGTCTTGAATTTTGGCCTTCACA 1861331 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||||||| ||||||||| | || | || || || |||| ||| || Sbjct 1861330 TTGTCAATGGTATCGGAGCTCTCCACTTCCAGAGTGATGGTCTTCCCGGTCAAAGTCTTC 1861271 Query 132110 ATGAAAATCTGCAT 132123 | |||||| ||||| Sbjct 1861270 ACGAAAATTTGCAT 1861257 >seq92 Length=17487894 Score = 89.7 bits (98), Expect = 5e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 |||||| || | ||||||||||||| |||||||| || || ||||| ||| || Sbjct 10601277 AACCAAGTGGAGCGTTGACTCTTTTTGGATGTTGTAATCCGACAATGTACGACCATCCTC 10601336 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 ||| |||||||| | | |||| || | ||||| |||||||| || ||||||||||| Sbjct 10601337 GAGTTGTTTACCAGCAAAGATAAGTCTTTGTTGGTCTGGAGGGATTCCTTCTTTATC 10601393 Score = 86.0 bits (94), Expect = 6e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 |||||| || | |||||||||||| |||||||| || || ||||| ||| || Sbjct 12099794 AACCAAGTGAAGAGTTGACTCTTTTTTGATGTTGTAATCAGCCAATGTACGACCATCCTC 12099735 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 || |||||||| | | |||| || | |||||||||||||| || ||||||||||| Sbjct 12099734 AAGTTGTTTACCAGCAAAGATAAGTCTTTGTTGATCTGGAGGGATTCCTTCTTTATC 12099678 >seq80 Length=21647715 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 131906 AAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGC 131965 || || | |||||| || | |||| ||||| ||||||||||||||| | |||||| Sbjct 2366323 AACCGGAGAACCAAGTGGAGAGTTGATTCTTTCTGAATGTTGTAGTCGGCTAAGGTACGG 2366264 Query 131966 GAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCT 132025 |||||| ||||||||||||| |||||| | || || || ||||| || ||||| Sbjct 2366263 CCATCTTCAAGCTGTTTACCGGCGAAGATTAATCTTTGCTGGTCCGGAGGAATTCCTTCC 2366204 Query 132026 TTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTC 132085 || || ||| ||| || | | || | || || | ||| ||||||| || Sbjct 2366203 TTGTCCTGAATCTTTGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCGACTTCGAGAGTT 2366144 Query 132086 AGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || || ||||| || ||||| | ||| | ||||| Sbjct 2366143 ATGGTCTTGCCAGTGAGTGTTTTCACGAATACTTGCAT 2366106 >seq139 Length=20634497 Score = 86.0 bits (94), Expect = 6e-12 Identities = 139/198 (70%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGA--ATCTTCGAGCTGTTTACC 131985 |||||||||| ||||||||||| || || | ||||| ||| ||||||||||| || Sbjct 14477833 TTGACTCTTTCTGAATGTTGTAATCCGCCAAAG--CGCGACCATCCTCGAGCTGTTTTCC 14477890 Query 131986 GGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTT 132045 || | ||||||| | |||||| || ||||| || |||||||| || ||| || || Sbjct 14477891 GGCAAAGATTAGTCTCTGTTGGTCCGGAGGGATCCCTTCTTTGTCCTGAATCTTCGCCTT 14477950 Query 132046 CAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGT 132105 | | || | ||||| | |||||| || | || | || ||||| |||| || Sbjct 14477951 TACATTGTCAATCGTATCCGAGCTCTCCACCTCAAGTGTTATGGTCTTACCCGTCAACGT 14478010 Query 132106 TTTTATGAAAATCTGCAT 132123 || | || |||||||| Sbjct 14478011 CTTGACAAATATCTGCAT 14478028 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 ||| |||| |||||| || | |||||| |||||||||||||| || || ||||| Sbjct 14478493 CAAACGCAGAACCAAGTGGAGAGTTGACTTCTTTTGAATGTTGTAATCTGCCAATGTACG 14478552 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| || ||||| |||| | |||| || | || || |||| || |||||||| Sbjct 14478553 ACCATCTTCAAGTTGTTTGCCGGCAAAGATCAGTCTTTGCTGGTCTGAAGAAATGCCTTC 14478612 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 ||| || || ||| || | | |||||| || |||| || || || | || Sbjct 14478613 TTTGTCCTGGATCTTTGCCTTGACGTTTTCCACTGTGTCGGAACTTTCGACCTCTAAGGT 14478672 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTG 132120 | || || || || ||||| |||| ||| || || Sbjct 14478673 TATGGTCTTGCCCGTGAGAGTCTTTACGAAGATTTG 14478708 >seq64 Length=9524166 Score = 82.4 bits (90), Expect = 7e-11 Identities = 164/237 (69%), Gaps = 7/237 (3%) Strand=Plus/Plus Query 46750 TCGAGCACGTGCCATGCGTTCGCAAA-AAGGCCCAGTGGGCCATGAAGTGGATCGAGAGC 46808 ||||| | | || ||||| ||| || || ||||||||||| |||| |||||||| | Sbjct 404014 TCGAGACCATCCCTTGCGT-CGCGAAGAAAGCCCAGTGGGCGATGACATGGATCGA---C 404069 Query 46809 GAGACCGCC-ACGCTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGttttt 46867 | || | | || | |||||||| || ||||| ||||| |||||||| | || || Sbjct 404070 G-GATCTCAGACCTTCGCCGAGCGTATCGTGGCTTTCGCCTGCGTCGAAGGTATCTTCTT 404128 Query 46868 ttCGGGCAGTTTTGCCGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGAC 46927 || || ||||| | | ||||| | |||| | || | ||||| || | || Sbjct 404129 CTCCGGTAGTTTCTGCTCGATTTTCTGGCTTAAGAAGCGCGGTCTCATGCCCGGATTAAC 404188 Query 46928 GTTCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTCT 46984 ||| || |||||||||||||| |||||||| ||||| || || ||||| || Sbjct 404189 CTTCTCCAATGAGTTGATCTCGCGAGACGAAGGCTTACACTGCGATTTCGCGTGCCT 404245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476610246777600