Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq101 95.1 1e-14 seq139 86.0 6e-12 seq92 82.4 7e-11 >seq101 Length=14560423 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || | |||||||| | ||||| | ||||| ||| | Sbjct 13329206 ATGCAAATCTTCGTCAAGACTCTCACCGGAAAGACCATCACTCTTGAAGTTGAAAGCTCT 13329265 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | || ||| || ||| || ||||| ||||| || || |||||| Sbjct 13329266 GACACCATTGACAACGTTAAAGCTAAGATTCAAGACAAAGAAGGTATTCCTCCGGATCAG 13329325 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||||| || | || || || ||||| ||||||| |||| | || || ||||| Sbjct 13329326 CAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGATGGAAGAACTCTCGCTGACTACAAC 13329385 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTG 25384 || ||||| || ||||| | ||||| ||| Sbjct 13329386 ATCCAAAAGGAGTCCACTCTCCATTTGGTG 13329415 >seq139 Length=20634497 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA-AGCCA 25232 ||||||| | ||||| || || | || || ||| | ||||| | || || || ||| Sbjct 11242465 CATGCAAATCTTTGTGAAGACTCTGACTGGTAAAACTATCACCTTGGAGGTTGAGAGCTC 11242524 Query 25233 ACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATC 25292 | || || ||||| | || ||| || || || |||||||| || || || || | Sbjct 11242525 A-GACACCATCGATAATGTGAAAGCCAAGATCCAGGACAAAGAGGGAATCCCTCCAGACC 11242583 Query 25293 AGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACA 25352 |||||||||| || | || || || || || ||||||| | | | | |||||||| Sbjct 11242584 AGCAAAGACTTATATTCGCTGGTAAGCAGCTTGAAGATGGTCGCACGCTTGCCGATTACA 11242643 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 |||| || ||||| ||||| | ||||| ||||| Sbjct 11242644 ATATCCAGAAAGAGTCCACTCTCCATTTGGTGTT 11242677 >seq92 Length=17487894 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA-AGCCAA 25233 ||||| | ||||| || || | ||||| | | | || || | ||||| || ||| | Sbjct 10601258 ATGCAGATATTTGTCAAGACTCTTACCGGTACAACCATAACCCTAGAAGTTGAGAGCTCA 10601199 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || ||||| || | || ||| || ||| || || || || || || || ||||| Sbjct 10601198 -GACACTATTGACAATGTTAAAGCTAAGATTCAAGACAAGGAAGGGATCCCTCCGGATCA 10601140 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTAC 25351 ||||||||||| | | ||| |||||||| || |||| | | | || ||| ||||| Sbjct 10601139 ACAAAGACTCATCTTTGCCGGTAAACAACTTGAGGATGGTCGTACATTGGCAG--ATTAC 10601082 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||||||||| || || || | || || || | || |||||||| || Sbjct 10601081 AATATTCAAAAGGAGTCGACTCTCCACTTGGTTCTTAGGTTGAGAGGTGG 10601032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445093509811200