Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq64 316 3e-80 >seq64 Length=9524166 Score = 316 bits (350), Expect = 3e-80 Identities = 392/525 (75%), Gaps = 16/525 (3%) Strand=Plus/Plus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 ||||||| || | ||||| | ||| ||||| |||||| || ||||||||||| |||||| Sbjct 403669 TGTTCCCAATTCACTACCCACAGATCTGGGAGATGTAC-AAGAAGGCCGAGGCATCCTTT 403727 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCC--ACTGGGTGTCGCTGAGCG 1455870 ||||| |||||||| ||||| | | | | |||||| | |||| | || | || Sbjct 403728 TGGACGGCCGAGGAAGTCGATTT--GTCACAAGACGGTCGCGATTGGGAGAATCTCAACG 403785 Query 1455871 ACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATC 1455930 ||| |||||| || |||||||| ||||| ||||| ||| |||||||| ||| || ||| Sbjct 403786 ACGGCGAGCGACACTTCATCAAACACGTGCTCGC-TTTCTTCGCCGCATCCGACGGAATC 403844 Query 1455931 GTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTG 1455990 || |||||| ||||| ||| || ||| || || ||| | | ||||| ||| Sbjct 403845 GTTCTCGAGAATCTGGCTTCCCGATTCATGTCCGATGTTCAAGTCTCGGAGGCGCGTGCT 403904 Query 1455991 TTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATC 1456050 || ||||| ||||||||||| ||||| ||||||||||| || | ||| ||||| || Sbjct 403905 TTCTACGGTTTCCAGATCGCGATCGAGAACATCCACTCCGAGATGTACAGCCTCCTCCTC 403964 Query 1456051 GACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTG 1456110 ||||| ||| |||||||| |||| ||||| ||||||||||||||||| || | Sbjct 403965 GACACATACATCAAGGACAACAAGGAGAGAGACCATCTCTTTCGCGCCATCGAGACCATC 404024 Query 1456111 CCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTC-GA 1456169 || | || ||| || ||| | |||||||||| |||||| || || ||| || Sbjct 404025 CCTTGCGTCGCGAAGAAAGCCCAGTGGGCGATGACATGGATCGAC-----GGATCTCAGA 404079 Query 1456170 CACTTTGCCGAGCGGCTCGTCGGCTTT-GCC-GCGTCGAGGGCATCTTTTTCTCGGGCAG 1456227 | ||| |||||||| |||| |||||| ||| ||||||| || ||||| ||||| || || Sbjct 404080 C-CTTCGCCGAGCGTATCGT-GGCTTTCGCCTGCGTCGAAGGTATCTTCTTCTCCGGTAG 404137 Query 1456228 TTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGG 1456272 ||||||| | || || ||||| ||||||||||| ||||||||||| Sbjct 404138 TTTCTGCTCGATTTTCTGGCTTAAGAAGCGCGGTCTCATGCCCGG 404182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177795767705920