Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq77 145 1e-29 >seq77 Length=18658056 Score = 145 bits (160), Expect = 1e-29 Identities = 166/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| ||||| | || | ||||| | |||| | |||||||||||||||| ||| || Sbjct 17991222 TCCTCCTTGATCAACATAACGAGCAGTATCATTAAAAACTCTCAGCATCGGAACAATTCC 17991163 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||||||| ||||||| || ||| ||| |||||||| |||| ||||| ||| || || Sbjct 17991162 ATTAGATGTACCATTCGTGCCACGAATGTAACTTCCCATTGCACGAATGTTATGAACCGA 17991103 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 || || ||||| || || |||| || | |||||| |||||| || ||||| || Sbjct 17991102 TACGCCAATTCCACCAGCTGATTTACTTATAACAGCACACTCTTTCAACGTCTCATAAAT 17991043 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 || || || ||||||||| |||| || | |||||||||| Sbjct 17991042 CCCTTCAATACTATCATCTTTCATACAAATCAAAAAACAGCTA 17991000 Score = 95.1 bits (104), Expect = 2e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 ||||| | ||| || | |||||||| || |||||||||||| ||| ||| | | || | Sbjct 17990896 GTTCCTGAATTGAAGAGAGTAGGAGACGCATGAGTGAACCATCTTTGAGACATTAAATGG 17990837 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 ||||||| || || || || | ||| | ||||| || | | ||| | ||| | | Sbjct 17990836 TATGTTTTGATTGCGGAATCAACATCTTCTTTGTGAATACCAACAGAGACTCTCATTAGC 17990777 Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170 || || ||||| | ||| || ||| | | |||||| |||||||||||||| || Sbjct 17990776 ATGTGTTGAGGCCTTTCAACAACTTTGCCTTGAACTTTCAAGAGGTATGATTTTTCAAGT 17990717 Query 70171 GTTTTAAACCCAAAATA 70187 ||||| || ||||| || Sbjct 17990716 GTTTTGAAACCAAAGTA 17990700 Score = 95.1 bits (104), Expect = 2e-14 Identities = 248/374 (66%), Gaps = 6/374 (2%) Strand=Plus/Minus Query 68683 TCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTA 68742 || |||||| | ||| |||||| |||||| | || || || ||| |||||| Sbjct 17992935 TCAGTTAAATCATGAAGAAGATGCTTATTAACCACAACGAACTCGCCGCTTAAGACTCTA 17992876 Query 68743 CGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCA 68802 || | || || || ||||| ||||| | | ||||||| ||||| ||||| ||| Sbjct 17992875 CGGCTATATATGTTTGAAGTATACGGTTCAAAACATTCATTGTTTCCAAGAATCTGACTC 17992816 Query 68803 GTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA-TTTCTAAGACCATGTGTTATGAT 68861 ||||| ||||||||||| || || | | | || | | ||||| | || | || ||| Sbjct 17992815 GTTGAAGCAGTTGGCATTGGAGCGA-CGAGAAGCGAGTTTCTGATTCCGTTCTTTGAGAT 17992757 Query 68862 TTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTA 68921 | ||| ||||| |||||||||| ||| || || |||||||| | ||| Sbjct 17992756 CATTTCTCTTAGAGAAGACCAATCCCAACGATTCGAAGGAGTTACATTCCACATATCAGG 17992697 Query 68922 TTGTAGAATTCCGTTACTTGCATATGA--TCCATTATATGTTTCATAAGGTCCTTCCTGT 68979 ||| || ||||| ||||| || || ||| | || || || || | ||||||| | Sbjct 17992696 TTGAAGTATTCCTTTACT--CACTGGACTTCCTTGGTAAGTCTCGTATGTACCTTCCTTT 17992639 Query 68980 TCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTA 69039 | || | || || || || | ||| ||| ||||| |||||||| || | ||| Sbjct 17992638 ACTGCAATCTCTGAAGATGACTTAAGTGCGTGGTAGTAAATGGTTTCGAATATGTCCTTG 17992579 Query 69040 TTGAGATCTTGTGC 69053 || || | ||| || Sbjct 17992578 TTCAGTTGTTGAGC 17992565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686907426182400