Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq115 141 1e-28 seq66 113 6e-20 seq64 107 2e-18 seq47 107 2e-18 >seq115 Length=22393718 Score = 141 bits (156), Expect = 1e-28 Identities = 225/319 (71%), Gaps = 8/319 (3%) Strand=Plus/Plus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| |||||||| || || || | |||||||| || || |||||||| |||||| | | Sbjct 2971408 AAACCCATCCATTTCCGTCAGAAGCTGATTAATAGTCTGCTCTCTCTCGTCATTTCC--G 2971465 Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | ||| ||||| | | |||| | ||||| || ||||||||||| ||||| ||||| Sbjct 2971466 CCTCCCATGCCAGCTCCTCTTTGCCTACCCACAGCGTCAATCTCATCTATGAAAACAATG 2971525 Query 11657 CATGGTTGATTTTCGCGGGCGATTTC--AAAGAGATCGCGAACCCTTTTGGCACCCACAC 11714 || ||| ||||| || ||| ||| ||||| | |||||| |||||||||| Sbjct 2971526 CAAGGTGC--TTTCGATTTCGCCTTCTCAAACAGATCCCTAACCCTAGACGCACCCACAC 2971583 Query 11715 CAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCAC 11774 ||||||||| |||||| || | | |||| ||| || ||| || || || ||| | Sbjct 2971584 CAACAAACAGCTCCACGAACTCCGACGCAGCACACGAGAAGAACGGCACTCCTGCTTCTC 2971643 Query 11775 CCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGC 11834 |||| | |||| || | || ||||| |||||||| ||| ||| | || | | Sbjct 2971644 CCGCCACCGCTCTCGCCAAAAGCGTCTTCCCCGTACCCGGCGGTCCCACCAGCAAACACC 2971703 Query 11835 CTCGGGGGATCTTGGCACC 11853 || |||||||| ||||| Sbjct 2971704 CTTTCGGGATCTTAGCACC 2971722 >seq66 Length=12628956 Score = 113 bits (124), Expect = 6e-20 Identities = 271/410 (66%), Gaps = 0/410 (0%) Strand=Plus/Minus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| ||||| | | ||| || || |||| || | || || || | | ||||| Sbjct 1472694 TCAAGAATATCAGCTCTATTGGTTGCAGCAACTACAATAACACCGGTGTTACCTTCAAAT 1472635 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 ||||||||||| || | | ||||| | || |||||||| ||||| || || | Sbjct 1472634 CCATCCATCTCAGTCAAGAGCTGATTGAGAGTCTGTTCTCTTTCATCGTTACCTCCACCA 1472575 Query 11603 CCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGT 11662 ||| | | | |||| | || || ||||| || ||||||| |||||||| || || Sbjct 1472574 ATACCGGTTCCTCTTTGCCTACCAACAGCATCGATTTCATCAACAAAGACAATGCAGGGA 1472515 Query 11663 TGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAAC 11722 ||||| ||| | | || ||||| || || ||| |||||| ||||| |||||| Sbjct 1472514 GCGTTTTCTTTGGCTTTCTTGAAAAGATCACGGACTCTTGAGGCACCAACACCGACAAAC 1472455 Query 11723 ATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCGATG 11782 ||||| ||||| | | ||||| || ||| || ||| | |||||| || || Sbjct 1472454 ATCTCAACAAACTCAGAACCAGAGATGGAGAAGAAAGGCACACCAGCTTCACCAGCAATA 1472395 Query 11783 GCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGG 11842 ||| || | || || || || ||||| || ||| | || | ||| ||| Sbjct 1472394 GCTTTTGCCAAAAGAGTTTTACCGGTACCAGGAGGACCGATTAACAGAACACCTTTCGGG 1472335 Query 11843 ATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCAC 11892 ||||| |||||| | | |||||||||||| ||| ||||| || || Sbjct 1472334 ATCTTAGCACCAACTGCGGTGAATCTCTCGGGTTTCTTCAGAAACTCAAC 1472285 >seq64 Length=9524166 Score = 107 bits (118), Expect = 2e-18 Identities = 153/215 (71%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 122677 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTC 122736 || || ||||| || || | ||||| |||||| || || ||||||||||| |||||| Sbjct 404221 CCTTCGTCTCGCGAGATCAACTCATTGGAGAAGGTTAATCCGGGCATGAGACCGCGCTTC 404162 Query 122737 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 || | ||| |||| | |||||| ||||||||||||||||| || || || || || Sbjct 404161 TTAAGCCAGAAAATCGAGCAGAAACTACCGGAGAAGAAGATACCTTCGACGCAGGCGAAA 404102 Query 122797 GCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGCCCATTTC 122856 || | | || |||||||||| |||| | | || | |||| |||| ||||| | Sbjct 404101 GCCACGATACGCTCGGCGAAGGTCTGAGA---TCCGTCGATCCATGTCATCGCCCACTGG 404045 Query 122857 GCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 122891 || |||||| | | || || | || | |||||| Sbjct 404044 GCTTTCTTCGCGACGCAAGGGATGGTCTCGATGGC 404010 >seq47 Length=18124089 Score = 107 bits (118), Expect = 2e-18 Identities = 292/446 (65%), Gaps = 6/446 (1%) Strand=Plus/Minus Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509 |||||||| || || || | || | ||| || || || || | | || || || Sbjct 14822068 CGATCAAACCGCCCTGGTCTCAGCAAAGCGGAGTCGAGAATGTCTGCTCTGTTGGTTGCA 14822009 Query 11510 GCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTA 11569 |||| || | || ||||| | | ||||| |||||||||||||| | | |||||| Sbjct 14822008 GCAACTACGATAACACCAGTGTTACCTTCAAAACCATCCATCTCGGTTAAGAGCTGATTA 14821949 Query 11570 ATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCA---CCAGCACTGCGTTGCTTGCCC 11626 | || |||||||| || ||||| || |||| |||| | | ||| | || Sbjct 14821948 AGAGTCTGTTCTCTTTCGTCATTACCTCC---ACCAATTCCAGTTCCTCTTTGTCTACCA 14821892 Query 11627 ACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 11686 || || || || ||||| | ||||||||||| || ||| || || ||| || Sbjct 14821891 ACAGCGTCTATTTCATCCACAAAGACAATACACGGAGCATTCTCTTTCGCCTTTTTGAAA 14821832 Query 11687 AGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAG 11746 || || || || ||| |||||| ||||||||||||||||| ||||| | | | || Sbjct 14821831 AGGTCACGGACTCTTGAGGCACCAACACCAACAAACATCTCAACAAACTCAGAACCGGAA 14821772 Query 11747 CACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCC 11806 | | ||| || ||| | |||||| || |||||| || | || || ||||| Sbjct 14821771 ATCGAAAAGAAAGGTACACCGGCTTCACCAGCAATGGCTTTAGCCAAAAGTGTTTTTCCA 14821712 Query 11807 GTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTCCAAAATAT 11866 ||||| || ||| | |||||| | ||| || ||| |||||| || | | Sbjct 14821711 GTACCAGGAGGACCAACAAGAAGGACACCTTTCGGAATCCGAGCACCAACCGCAGTAAAC 14821652 Query 11867 CTCTCGGGTTGCTTGAGAAAATCCAC 11892 ||||| || | ||| | ||| ||||| Sbjct 14821651 CTCTCAGGCTTCTTTAAAAACTCCAC 14821626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628030743936000