Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq66 127 2e-24 seq115 120 4e-22 seq64 104 3e-17 seq47 102 1e-16 >seq66 Length=12628956 Score = 127 bits (140), Expect = 2e-24 Identities = 302/451 (67%), Gaps = 4/451 (1%) Strand=Plus/Minus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 || ||||| || ||||| | || | || ||||| |||||| | | ||| || || Sbjct 1472727 CGGTCAAACCGTCCTGGTCTGAGCAAAGCAGAGTCAAGAATATCAGCTCTATTGGTTGCA 1472668 Query 9584 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 || | |||| || ||| || | | ||||| ||||||||||| ||||| || || || Sbjct 1472667 GCAACTACAATAACACCGGTGTTACCTTCAAATCCATCCATCTCAGTCAAGAGCTGATTG 1472608 Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACG 9703 | ||| ||||| | |||||| || || | ||| | | | |||| | || || Sbjct 1472607 AGAGTCTGTTCTCTTTCATCGTTACCTCCACCAATACCGGTTCCTCTTTGCCTACCAACA 1472548 Query 9704 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGC-GACTTCAAAGAG 9762 ||||| || ||||||| ||||| ||||| || ||||| || ||| ||| || Sbjct 1472547 GCATCGATTTCATCAACAAAGACAATGCAGGGAGCGTTTTCTTTGGCTTTCTTGAAA-AG 1472489 Query 9763 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACA 9822 ||| || || | ||| || ||||| ||||||||||| ||||| | | | | | | Sbjct 1472488 ATCACGGACTCTTGAGGCACCAACACCGACAAACATCTCAACAAACTCAGAACCAG-AGA 1472430 Query 9823 TTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9881 | | || ||| || ||| || |||||| ||||| ||| || | |||||| ||||| | Sbjct 1472429 TGGAGAAGAAAGGCACACCAGCTTCACCAGCAATAGCTTTTGCCAAAAGAGTTTTACCGG 1472370 Query 9882 TACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATC 9941 |||| || ||| | || ||||| || ||||| || ||| | | | ||| Sbjct 1472369 TACCAGGAGGACCGATTAACAGAACACCTTTCGGGATCTTAGCACCAACTGCGGTGAATC 1472310 Query 9942 TCTCAGGTTGCTTAAGAAAATCCACAATTTC 9972 |||| |||| ||| ||||| || || | ||| Sbjct 1472309 TCTCGGGTTTCTTCAGAAACTCAACCACTTC 1472279 >seq115 Length=22393718 Score = 120 bits (132), Expect = 4e-22 Identities = 201/283 (71%), Gaps = 12/283 (4%) Strand=Plus/Plus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||| |||||||| || |||| ||| || |||||||| || || | || ||||| | | Sbjct 2971408 AAACCCATCCATTTCCGTCAGAAGCTGATTAATAGTCTGCTCTCTCTCGTCATTTCC--G 2971465 Query 9673 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730 | | ||| ||||| | | |||| | ||||| || ||||||||||| ||||| || ||| Sbjct 2971466 CCTCCCATGCCAGCTCCTCTTTGCCTACCCACAGCGTCAATCTCATCTATGAAAACAATG 2971525 Query 9731 CATGGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGC--CCAC 9786 || ||| ||||| || |||| ||| ||||||| || || || | ||| |||| Sbjct 2971526 CAAGGTGC--TTTCGATTTCGCCTTCTCAAACAGATCCC-TA-ACCCTAGACGCACCCAC 2971581 Query 9787 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 9846 ||||||||||| |||||| || | | || | ||| || ||| || || | ||| Sbjct 2971582 ACCAACAAACAGCTCCACGAACTCCGACGCAGCACACGAGAAGAACGGCACTCCTGCTTC 2971641 Query 9847 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGC 9889 ||||| | |||| || | ||| ||||| |||||||| ||| Sbjct 2971642 TCCCGCCACCGCTCTCGCCAAAAGCGTCTTCCCCGTACCCGGC 2971684 >seq64 Length=9524166 Score = 104 bits (114), Expect = 3e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 94796 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 94855 |||| || ||||| || | || || || || || || |||||||||||||| ||| | Sbjct 404080 CCTTCGCCGAGCGTATCGTGGCTTTCGCCTGCGTCGAAGGTATCTTCTTCTCCGGTAGTT 404139 Query 94856 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 94915 ||||| | |||| ||||| |||||||| ||||||||||| || | ||||||||| | Sbjct 404140 TCTGCTCGATTTTCTGGCTTAAGAAGCGCGGTCTCATGCCCGGATTAACCTTCTCCAATG 404199 Query 94916 AGCTTATCTCTCGTGACGAGGG 94937 || | ||||| || ||||| || Sbjct 404200 AGTTGATCTCGCGAGACGAAGG 404221 >seq47 Length=18124089 Score = 102 bits (112), Expect = 1e-16 Identities = 299/455 (66%), Gaps = 12/455 (3%) Strand=Plus/Minus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 |||||||| || ||||| | || | ||| || || || || | | || || || Sbjct 14822068 CGATCAAACCGCCCTGGTCTCAGCAAAGCGGAGTCGAGAATGTCTGCTCTGTTGGTTGCA 14822009 Query 9584 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 || | || | || ||| || | | ||||||||||||||||| || || || || ||| Sbjct 14822008 GCAACTACGATAACACCAGTGTTACCTTCAAAACCATCCATCTCGGTTAAGAGCTGATTA 14821949 Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCC 9700 | ||| ||||| | ||| ||||| || |||| |||| | | ||| | || Sbjct 14821948 AGAGTCTGTTCTCTTTCGTCATTACCT---CCACCAATTCCAGTTCCTCTTTGTCTACCA 14821892 Query 9701 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAG 9760 || || || || ||||| | ||||| || || || ||| || || || || Sbjct 14821891 ACAGCGTCTATTTCATCCACAAAGACAATACACGGAGCATTCTCTTTCGCCTTTTTGAAA 14821832 Query 9761 AGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9820 || || || || | ||| || ||||||||||||||||| ||||| | | ||||| Sbjct 14821831 AGGTCACGGACTCTTGAGGCACCAACACCAACAAACATCTCAACAAACTCAGAACCGGAA 14821772 Query 9821 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9879 || | | ||| || ||| | |||||| ||||||||| || | ||| || || || Sbjct 14821771 -ATCGAAAAGAAAGGTACACCGGCTTCACCAGCAATGGCTTTAGCCAAAAGTGTTTTTCC 14821713 Query 9880 CGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGT- 9938 ||||| || ||| | || ||| ||||| |||||| || ||| || ||| Sbjct 14821712 AGTACCAGGAGGACCAACAAGAAGGACACCTTTCGGAATCCGAGCACCA--ACCGCAGTA 14821655 Query 9939 -ATCTCTCAGGTTGCTTAAGAAAATCCACAATTTC 9972 | |||||||| | ||| | ||| ||||| | ||| Sbjct 14821654 AACCTCTCAGGCTTCTTTAAAAACTCCACCACTTC 14821620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583259633478400