Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq64 107 2e-18 >seq64 Length=9524166 Score = 107 bits (118), Expect = 2e-18 Identities = 310/465 (67%), Gaps = 18/465 (4%) Strand=Plus/Plus Query 59658 GATTGGGACAAGCTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTC 59717 |||||||| || ||||| ||| ||||| || |||||||| || || || |||||| Sbjct 403767 GATTGGGAGAATCTCAACGACGGCGAGCGACACTTCATCAAACACGTGCTCGCTTTCTTC 403826 Query 59718 GCGGCGAGTGATGGAATTGTGATGGAAAATATAGA--CATGAA-CTTTTCCAAGGATGTC 59774 || || || ||||| || | || ||| | | | || | | ||| ||||| Sbjct 403827 GCCGCATCCGACGGAATCGTTCTCGAGAATCTGGCTTCCCGATTCATGTCC---GATGTT 403883 Query 59775 CAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTC 59833 || | | ||||| || | ||||||| | ||| ||| | |||| |||||||| Sbjct 403884 CAAGTCTCGGAGGCGCGTGCTTTCTACGGTTTCCAGATCGCG-ATCGAGAACATCCACTC 403942 Query 59834 CGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCT 59893 ||||| |||| ||| | |||| | | ||||||| | |||| | ||| Sbjct 403943 CGAGATGTACAGCCTCCTCCTCGACACATACATCAAGGACAACAAGGAGAGAGACCATCT 404002 Query 59894 GTTCCGTGCCATAGAGACG-TCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGT 59952 || || ||||| ||||| |||| || || | ||||| | ||||| ||| | Sbjct 404003 CTTTCGCGCCATCGAGACCATCCCTTGC-GTCGCGAAGAAAGCCCAGTGGGCGATGACAT 404061 Query 59953 GGATGAGTCCTGGAGCATCA----TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAA 60008 |||| | | ||| | ||| || || | ||| || | ||||| || ||||| ||| Sbjct 404062 GGATC-GAC--GGATC-TCAGACCTTCGCCGAGCGTATCGTGGCTTTCGCCTGCGTCGAA 404117 Query 60009 GGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATG 60068 || ||||||||||| || ||||| | ||||||||||| || ||||| || |||||| Sbjct 404118 GGTATCTTCTTCTCCGGTAGTTTCTGCTCGATTTTCTGGCTTAAGAAGCGCGGTCTCATG 404177 Query 60069 CCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGC 60113 || || | | |||||||| ||| |||| || || ||||| ||| Sbjct 404178 CCCGGATTAACCTTCTCCAATGAGTTGATCTCGCGAGACGAAGGC 404222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548523702950400