Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq153 589 3e-163 seq80 477 1e-129 seq146 136 5e-27 seq142 136 5e-27 seq76 136 5e-27 seq90 116 4e-21 >seq153 Length=83015 Score = 589 bits (652), Expect = 3e-163 Identities = 703/954 (74%), Gaps = 0/954 (0%) Strand=Plus/Minus Query 176147 TTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGTT 176206 ||||| |||| ||||||||||| | ||||| || | | || || | | || Sbjct 52438 TTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCCGTTT 52379 Query 176207 TTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTAG 176266 |||| | ||||| ||||| || || || || ||||| || |||||||| ||||| || Sbjct 52378 TTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTT 52319 Query 176267 CAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAACG 176326 | |||||||| || || |||||||| || || || || || | | || | || || Sbjct 52318 CTGGATCTCTTCTTTACGGAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTGCCG 52259 Query 176327 CAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACA 176386 | || || | ||||| ||||| ||||||||||| ||| | ||||| |||||||| |||| Sbjct 52258 CTATTGGTTTGCACTTTTACCCGATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACA 52199 Query 176387 ATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATGG 176446 | || || || || |||| |||| | ||||| | | ||| | | ||| |||| Sbjct 52198 ACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGG 52139 Query 176447 GACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATACT 176506 | || | ||||||||||||| | | || || |||||||||||||| ||||||||| | Sbjct 52138 GTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATT 52079 Query 176507 CTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTT 176566 | || || || | || || | || |||||| | |||| ||| | ||||||||| || Sbjct 52078 CAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTT 52019 Query 176567 TCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAG 176626 | ||||||||||||||||| || || || ||||| |||||||||||| |||||||||| | Sbjct 52018 TTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGG 51959 Query 176627 CAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTG 176686 | |||||||||||||| ||||||||||| || ||| | || ||||| ||||| || || | Sbjct 51958 CTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCG 51899 Query 176687 GATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACAA 176746 | || || || || ||||| || | || |||||| | | || || || | Sbjct 51898 GTTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCA 51839 Query 176747 CCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAACA 176806 | ||||| ||||| || | ||||||| |||||| ||||||||||| || ||||||| Sbjct 51838 CAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAGAAACTTACAACA 51779 Query 176807 TTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAACT 176866 |||||||||| |||||||| ||||| || | |||||||| |||||| |||||| |||| Sbjct 51778 TTGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACT 51719 Query 176867 CAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAA 176926 | | | | || |||||| | || || | || || || | || ||||||||||| Sbjct 51718 CCCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTT 51659 Query 176927 TGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAG 176986 | ||| || |||| ||||| |||||||| || |||||||| |||||||| || || | | Sbjct 51658 TAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTG 51599 Query 176987 ACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTA 177046 | | || || ||| ||| |||| ||||| |||||||||| |||||||||| Sbjct 51598 ATAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTA 51539 Query 177047 TGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCTG 177100 ||||||||||||| || |||||||||||||||||||| || ||||| ||||||| Sbjct 51538 TGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTG 51485 Score = 136 bits (150), Expect = 5e-27 Identities = 199/278 (72%), Gaps = 10/278 (4%) Strand=Plus/Plus Query 19295 ACCTGTAACAGTACAGTATCCTTACGAGAAACTCATACCGTCAGAGAGATACCGTGGTCG 19354 ||||||||| | || ||||| || || ||| | ||| | || || | | ||| || || Sbjct 15512 ACCTGTAACTATTCAATATCCCTATGAAAAATTAATAACCTCGGAACGTTTCCGCGGGCG 15571 Query 19355 TATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTAT 19414 || || | ||| ||||| || || || || ||||| || ||||| ||||||| ||||| Sbjct 15572 AATCCATTTTGAATTTGATAAATGCATTGCTTGTGAAGTATGTGTTCGAGTATGTCCTAT 15631 Query 19415 CAATCTACCAGTGGTGGATTGGGTGATG--AACAAACA---GACAAAGAAGAAAGAACTT 19469 ||||||| || || |||||| || ||| || | || ||| | || | ||| Sbjct 15632 AGATCTACCTGTTGTTGATTGGAAATTGGAAACGAATATTAGAAAAAAACGATTG--CTT 15689 Query 19470 AGAAATTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGC 19529 | |||| || || |||||| ||||| || |||||||| || || || |||||| Sbjct 15690 A---ATTACAGTATTGATTTTGGAATTTGTATATTTTGCGGTAATTGTGTTGAATATTGC 15746 Query 19530 CCAACAAACTGTCTATCCATGACAGAAGAATATGAATT 19567 |||||||| ||| | || ||||| |||||||||||||| Sbjct 15747 CCAACAAATTGTTTGTCAATGACTGAAGAATATGAATT 15784 >seq80 Length=21647715 Score = 477 bits (528), Expect = 1e-129 Identities = 644/890 (72%), Gaps = 8/890 (1%) Strand=Plus/Plus Query 176205 TTTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGT 176264 |||||| | ||||| |||| | || | || ||||| || |||||| | ||||| || Sbjct 17113539 TTTTATTATCGCATTCATTGTTGTTCCTCTAGTAGATATTGATGGTATTTGTGAACCTGT 17113598 Query 176265 AGCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAG-CAGTCGTCCCAAGCTCAA 176323 | ||||||| || || |||||||| || || || || | || | ||| | || | Sbjct 17113599 TTCTAGATCTCTTCTTTACGGAAACAATATTATTTCTGGTGTCATTATTCCTA--CTTAT 17113656 Query 176324 A-CGCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTC 176382 ||| || || | ||||| ||||| |||| |||||| ||| | ||||| |||||||| Sbjct 17113657 GTCGCTATTGGTTTGCACTTTTACCCGATCTAGGAAGCTGCATCCGTTGATGAATGGCTA 17113716 Query 176383 TACAATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTAC 176442 ||||| || | | || |||| |||| | ||||| | | ||| | | ||| Sbjct 17113717 TACAACGGTTGTCTTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTAT 17113776 Query 176443 ATGGGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCA 176502 ||||| || | ||||||||||||| | | || || ||||||||||||| | ||||||| Sbjct 17113777 ATGGGTCGTGAGTGGGAACTTAGTTTCTGTCTGGGTGTGCGTCCTTGGATTTTTGTTGCA 17113836 Query 176503 TACTCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGA 176562 || || || ||||| | || || | || |||||| | ||| ||| | |||||||| Sbjct 17113837 TATTCAGCTCCAGTTGCAGCTGCTACTGCTGTTTTCTTGAACTACCCAATTTGTCAAGGA 17113896 Query 176563 TCTTTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTC 176622 ||| | ||||||||||||||| | || || ||||| |||||||||||| |||||||| Sbjct 17113897 AGTTTTTATGATGGTATGCCTCTATGAATCTCTGGTACTTTCAACTTTATGATTGTATTC 17113956 Query 176623 CAAGCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTT 176682 | || |||||||||||||| ||||||||||| || ||| | || ||||| ||||| || Sbjct 17113957 TAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTC 17114016 Query 176683 GGTGGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAG 176742 || || || || || || ||||| || | | || |||||| | | || || Sbjct 17114017 GGCGGTTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACTTCTAGTTTGATCAGGGAA 17114076 Query 176743 ACAACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATAC 176802 || || ||||| ||||| || | ||||||| |||||| ||||||||| | || ||| Sbjct 17114077 ACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAAAAACTTAC 17114136 Query 176803 AACATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAAT 176862 |||||||||| ||| |||| || ||||| || | |||||||| |||||| |||||| Sbjct 17114137 AACATTGTAGTTGCTCACGACTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAAC 17114196 Query 176863 AACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACT 176922 ||||| | | | || |||||| | ||||| | || || || || ||||||||| Sbjct 17114197 AACTCCCGTTCTTTACATTTCTTCTTAGCAGCTTGGCCGGTAGTAGCTATTTGGTTTACT 17114256 Query 176923 GCAATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTC 176982 || | ||| || |||| ||||| |||||||| || ||||||| ||||||| || | Sbjct 17114257 GCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAGTTTCAACCCATCAATA 17114316 Query 176983 TTAGACAACTCTGGTAAAGTG--ATTCCTACATGGGGAGATATCCTTAACCGTGCAAACC 177040 | || | || | || ||| ||| ||| |||| ||||| |||||||||| || | Sbjct 17114317 GTTGA-TAGTCAAG-AACGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAATC 17114374 Query 177041 TTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGAC 177090 ||| ||||||||||||||| || |||||||||||||||||||| ||| || Sbjct 17114375 TTGTTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTTTAC 17114424 >seq146 Length=17584 Score = 136 bits (150), Expect = 5e-27 Identities = 199/278 (72%), Gaps = 10/278 (4%) Strand=Plus/Minus Query 19295 ACCTGTAACAGTACAGTATCCTTACGAGAAACTCATACCGTCAGAGAGATACCGTGGTCG 19354 ||||||||| | || ||||| || || ||| | ||| | || || | | ||| || || Sbjct 13745 ACCTGTAACTATTCAATATCCCTATGAAAAATTAATAACCTCGGAACGTTTCCGCGGGCG 13686 Query 19355 TATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTAT 19414 || || | ||| ||||| || || || || ||||| || ||||| ||||||| ||||| Sbjct 13685 AATCCATTTTGAATTTGATAAATGCATTGCTTGTGAAGTATGTGTTCGAGTATGTCCTAT 13626 Query 19415 CAATCTACCAGTGGTGGATTGGGTGATG--AACAAACA---GACAAAGAAGAAAGAACTT 19469 ||||||| || || |||||| || ||| || | || ||| | || | ||| Sbjct 13625 AGATCTACCTGTTGTTGATTGGAAATTGGAAACGAATATTAGAAAAAAACGATTG--CTT 13568 Query 19470 AGAAATTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGC 19529 | |||| || || |||||| ||||| || |||||||| || || || |||||| Sbjct 13567 A---ATTACAGTATTGATTTTGGAATTTGTATATTTTGCGGTAATTGTGTTGAATATTGC 13511 Query 19530 CCAACAAACTGTCTATCCATGACAGAAGAATATGAATT 19567 |||||||| ||| | || ||||| |||||||||||||| Sbjct 13510 CCAACAAATTGTTTGTCAATGACTGAAGAATATGAATT 13473 >seq142 Length=18872 Score = 136 bits (150), Expect = 5e-27 Identities = 199/278 (72%), Gaps = 10/278 (4%) Strand=Plus/Plus Query 19295 ACCTGTAACAGTACAGTATCCTTACGAGAAACTCATACCGTCAGAGAGATACCGTGGTCG 19354 ||||||||| | || ||||| || || ||| | ||| | || || | | ||| || || Sbjct 9204 ACCTGTAACTATTCAATATCCCTATGAAAAATTAATAACCTCGGAACGTTTCCGCGGGCG 9263 Query 19355 TATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTAT 19414 || || | ||| ||||| || || || || ||||| || ||||| ||||||| ||||| Sbjct 9264 AATCCATTTTGAATTTGATAAATGCATTGCTTGTGAAGTATGTGTTCGAGTATGTCCTAT 9323 Query 19415 CAATCTACCAGTGGTGGATTGGGTGATG--AACAAACA---GACAAAGAAGAAAGAACTT 19469 ||||||| || || |||||| || ||| || | || ||| | || | ||| Sbjct 9324 AGATCTACCTGTTGTTGATTGGAAATTGGAAACGAATATTAGAAAAAAACGATTG--CTT 9381 Query 19470 AGAAATTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGC 19529 | |||| || || |||||| ||||| || |||||||| || || || |||||| Sbjct 9382 A---ATTACAGTATTGATTTTGGAATTTGTATATTTTGCGGTAATTGTGTTGAATATTGC 9438 Query 19530 CCAACAAACTGTCTATCCATGACAGAAGAATATGAATT 19567 |||||||| ||| | || ||||| |||||||||||||| Sbjct 9439 CCAACAAATTGTTTGTCAATGACTGAAGAATATGAATT 9476 >seq76 Length=15912 Score = 136 bits (150), Expect = 5e-27 Identities = 199/278 (72%), Gaps = 10/278 (4%) Strand=Plus/Minus Query 19295 ACCTGTAACAGTACAGTATCCTTACGAGAAACTCATACCGTCAGAGAGATACCGTGGTCG 19354 ||||||||| | || ||||| || || ||| | ||| | || || | | ||| || || Sbjct 12053 ACCTGTAACTATTCAATATCCCTATGAAAAATTAATAACCTCGGAACGTTTCCGCGGGCG 11994 Query 19355 TATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTAT 19414 || || | ||| ||||| || || || || ||||| || ||||| ||||||| ||||| Sbjct 11993 AATCCATTTTGAATTTGATAAATGCATTGCTTGTGAAGTATGTGTTCGAGTATGTCCTAT 11934 Query 19415 CAATCTACCAGTGGTGGATTGGGTGATG--AACAAACA---GACAAAGAAGAAAGAACTT 19469 ||||||| || || |||||| || ||| || | || ||| | || | ||| Sbjct 11933 AGATCTACCTGTTGTTGATTGGAAATTGGAAACGAATATTAGAAAAAAACGATTG--CTT 11876 Query 19470 AGAAATTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGC 19529 | |||| || || |||||| ||||| || |||||||| || || || |||||| Sbjct 11875 A---ATTACAGTATTGATTTTGGAATTTGTATATTTTGCGGTAATTGTGTTGAATATTGC 11819 Query 19530 CCAACAAACTGTCTATCCATGACAGAAGAATATGAATT 19567 |||||||| ||| | || ||||| |||||||||||||| Sbjct 11818 CCAACAAATTGTTTGTCAATGACTGAAGAATATGAATT 11781 >seq90 Length=4948294 Score = 116 bits (128), Expect = 4e-21 Identities = 143/192 (74%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 176911 ATCTGGTTTACTGCAATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTC 176970 || ||||||||||| | ||| || |||| | || ||||| || || ||||| || ||| Sbjct 3477015 ATTTGGTTTACTGCTTTAGGTATTAGCACTGTAGCTTTCAATCTAAATGGTTTTAATTTC 3477074 Query 176971 AACCAGTCTGTCTTAGACAACTCTGGTAAAGTG--ATTCCTACATGGGGAGATATCCTTA 177028 ||||| || || | || | || | | ||| ||| ||| |||| ||||| ||| Sbjct 3477075 AACCAATCAGTAGTTGATAG-TCAA-TGACGTGTTATTAATACTTGGGTTGATATTATTA 3477132 Query 177029 ACCGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTG 177088 | ||||| ||||||||||||||||||||||| | |||||||||| |||||||| || | Sbjct 3477133 ATCGTGCTAACCTTGGTATGGAAGTTATGCATTAAGGTAATGCTCAAAACTTCCCTCTAG 3477192 Query 177089 ACCTTGCTGCTG 177100 | || | ||||| Sbjct 3477193 AACTAGATGCTG 3477204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603493193011200