Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq77 100 3e-16 seq126 91.5 1e-13 >seq77 Length=18658056 Score = 100 bits (110), Expect = 3e-16 Identities = 154/216 (71%), Gaps = 3/216 (1%) Strand=Plus/Plus Query 34520 AACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATG 34579 || |||||||| || |||| | || | || ||||| || ||||| |||||| Sbjct 13060530 AATCCTGATGATCGACGGATTATAATCTCAGCTTGGAATCCATCTGATCTTAAACTGATG 13060589 Query 34580 GCGCTCCCCCCGTGCCACACCCTCTGC-CAATTCTACGTCGCGAATGGGGAGCTGTCCTG 34638 ||||| || || ||||||| | ||| || || ||||| |||||||| || || || || Sbjct 13060590 GCGCTTCCTCCATGCCACA-TGTTTGCACAGTTTTACGTAGCGAATGGAGAACTTTCATG 13060648 Query 34639 CCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTA 34698 || | |||||||| || | || ||||| | || || ||||| ||||||||| || Sbjct 13060649 TCAAATGTATCAACGTTCAGCTGATATGGGTCTCGGTGTACCGTTTAACATTGCTTCGTA 13060708 Query 34699 CGCTCTGCTCACGTACATGATCGCTCATGTC-GTGG 34733 | || | || || | ||| ||||||||||| |||| Sbjct 13060709 CTCTTTACTTACATGCATTCTCGCTCATGTCTGTGG 13060744 Score = 100 bits (110), Expect = 3e-16 Identities = 154/216 (71%), Gaps = 3/216 (1%) Strand=Plus/Minus Query 6612 CCAC-GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACC 6670 |||| ||||||||||| ||| | || || | || ||| ||||||||| ||||| || Sbjct 13060744 CCACAGACATGAGCGAGAATGCATGTAAGTAAAGAGTACGAAGCAATGTTAAACGGTACA 13060685 Query 6671 CCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACG 6730 || | ||||| || | || |||||||| | || || || || || |||||||| ||| Sbjct 13060684 CCGAGACCCATATCAGCTGAACGTTGATACATTTGACATGAAAGTTCTCCATTCGCTACG 13060625 Query 6731 TAGAATTG-GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTT 6789 || || || ||| | ||||||| || || ||||||||||| ||||| || || Sbjct 13060624 TAAAACTGTGCAAACA-TGTGGCATGGAGGAAGCGCCATCAGTTTAAGATCAGATGGATT 13060566 Query 6790 CCACGCGCACATCACGATCCTTCTGTCATCAGGGTT 6825 ||| || | || | |||| || |||||||| || Sbjct 13060565 CCAAGCTGAGATTATAATCCGTCGATCATCAGGATT 13060530 >seq126 Length=8766530 Score = 91.5 bits (100), Expect = 1e-13 Identities = 175/253 (69%), Gaps = 4/253 (2%) Strand=Plus/Plus Query 6596 TCCCCAGGAACCA-ACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGC 6654 || |||||||| | | | || ||||||||||| ||| | || || |||| ||| ||| Sbjct 4332204 TCACCAGGAACAAGATCACA-GACATGAGCGAGGATGCAAGTAAGAAGAGAGTAGGAAGC 4332262 Query 6655 AATGTTGAACGGCACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAG 6714 |||||| ||||| || || | |||||||| | || || ||||| | || || || || Sbjct 4332263 AATGTTAAACGGTACACCAAGGCCCATGTCCGCTGAACGCTGATACATTTGACATGAGAG 4332322 Query 6715 CTCCCCATTCGCGACGTAGAATTG-GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAG 6773 ||| || | || || ||||| || ||| | |||| || || || |||||||||| Sbjct 4332323 CTCTCCTTCTGCTACATAGAACTGTGCA-AACATGTGACATGGAGGAAGCGCCATCAATT 4332381 Query 6774 GGAGATCCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCA 6833 |||||| || ||||| || | | | ||| | || |||||||| || ||| | Sbjct 4332382 TGAGATCAGAAGGATTCCAAGCTGATAATATGATGCGTCGATCATCAGGATTGTTCTTGA 4332441 Query 6834 AGGTGTCGATCAC 6846 ||||||| || Sbjct 4332442 TCTTGTCGATTAC 4332454 Score = 91.5 bits (100), Expect = 1e-13 Identities = 175/253 (69%), Gaps = 4/253 (2%) Strand=Plus/Minus Query 34499 GTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAAC 34558 || ||||||| | ||| || |||||||| || | ||| | | | || ||||| Sbjct 4332454 GTAATCGACAAGATCAAGAACAATCCTGATGATCGACGCATCATATTATCAGCTTGGAAT 4332395 Query 34559 CCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGC-CAATTCTACGT 34617 || |||||| |||||||||| || || || |||| | ||| || ||||| || Sbjct 4332394 CCTTCTGATCTCAAATTGATGGCGCTTCCTCCATGTCACATGTT-TGCACAGTTCTATGT 4332336 Query 34618 CGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGT 34677 || | || ||||| || || || | ||||| || || | |||||||| | || || Sbjct 4332335 AGCAGAAGGAGAGCTCTCATGTCAAATGTATCAGCGTTCAGCGGACATGGGCCTTGGTGT 4332276 Query 34678 GCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGT- 34736 ||||| ||||||||| ||| |||| || || | ||| ||||||||||| || | | Sbjct 4332275 ACCGTTTAACATTGCTTCCTACTCTCTTCTTACTTGCATCCTCGCTCATGTC-TGTGATC 4332217 Query 34737 TGGTTCCTGGGGA 34749 | |||||||| || Sbjct 4332216 TTGTTCCTGGTGA 4332204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448261503475200