Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq72 107 1e-18 seq75 102 6e-17 seq139 89.7 4e-13 seq101 87.8 1e-12 >seq72 Length=2807273 Score = 107 bits (118), Expect = 1e-18 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || ||||| || | ||||| ||| || || | || || || ||| | Sbjct 227040 ATGCAGATCTTCGTGAAGACGTTGACTGGCAAAACCATCACCTTGGAAGTTGAGAGCTCA 226981 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| ||||| |||||| ||||| ||||| |||||| | || ||| | Sbjct 226980 GACACGATCGACAAT--GTCAAAGCTAAAATCCAAGACAAGGAAGGTATCCCACCGGACC 226923 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| | || || || |||||||| |||||||| |||| || | |||| | ||||||| Sbjct 226922 AGCAAAGATTGATCTTCGCCGGAAAGCAATTGGAAGACGGCCGTACCTTGGCTGATTACA 226863 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||| || || ||| || | || ||||| |||||| | ||||| ||| Sbjct 226862 ACATTCAGAAGGAGTCAACCCTTCACTTGGTCTTGCGTCTTCGTGGAGGC 226813 >seq75 Length=6520592 Score = 102 bits (112), Expect = 6e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| || |||||||| || || || || || | || || |||||| || Sbjct 967473 ATGCAAATTTTCGTTAAAACTCTCACCGGCAAGACCATCACCCTCGAGGTGGAAAGCTCC 967532 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| |||| || ||| || || ||||| ||||| |||| ||| | Sbjct 967533 GACACGATCGACAAC--GTTAAAGCCAAGATCCAGGACAAGGAAGGAATTCCCCCGGATC 967590 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| || | || || || ||||| |||||||| |||| |||| ||| | ||||||| Sbjct 967591 AGCAAAGGCTTATCTTCGCGGGAAAGCAATTGGAAGACGGTCGCACGTTGGCTGATTACA 967650 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || || ||| | || |||||| || | | ||||| || Sbjct 967651 ACATCCAGAAGGAATCCACCCTTCACTTGGTTCTGAGGCTTCGTGGTGG 967699 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || || ||||| || || || || || || |||| || || ||| | Sbjct 967701 ATGCAAATATTCGTCAAAACCCTAACCGGAAAGACAATAACCCTTGAGGTGGAGAGCTCT 967760 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || |||| |||||| || || ||||| || ||| |||| ||| | Sbjct 967761 GACACCATCGACAAC--GTCAAAGCCAAGATCCAGGACAAGGAGGGTATTCCACCGGACC 967818 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| |||| || || ||||| |||||| | || |||| || | |||| | || |||| Sbjct 967819 AGCAAAGGTTGATCTTCGCCGGTAAACAACTCGAGGACGGCCGAACCTTGGCGGACTACA 967878 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || ||| || | || ||||| | ||| | ||||| || Sbjct 967879 ACATCCAGAAGGAGTCAACCCTTCACTTGGTGCTTCGTCTCCGTGGAGG 967927 >seq139 Length=20634497 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || |||||||| || ||||| || || || | || || || ||| | Sbjct 11242238 ATGCAAATATTCGTGAAAACACTGACTGGAAAGACCATCACTCTCGAGGTTGAGAGCTCT 11242297 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| || || ||| || ||||| ||||| |||| ||| | Sbjct 11242298 GACACCATCGACAAT--GTTAAGGCAAAGATCCAGGACAAGGAAGGGATTCCTCCGGATC 11242355 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| | || || ||||||||||||||| | || || | || | ||| | ||||||| Sbjct 11242356 AGCAAAGATTGATCTTTGCCGGAAAACAACTAGAAGATGGCCGGACCTTAGCTGATTACA 11242415 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||||||||| ||| || | ||| | || | ||| | ||||| ||| Sbjct 11242416 ACATCCAAAAGGAGTCTACGCTTCATCTTGTCCTTCGTCTTCGTGGTGGC 11242465 >seq101 Length=14560423 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || ||||||||||| ||||| || || || | || ||||| ||| | Sbjct 13328978 ATGCAAATCTTCGTGAAAACTCTCACTGGCAAGACCATCACTCTCGAGGTCGAGAGCTCT 13329037 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || |||| || || ||| || ||||| ||||| |||| ||| | Sbjct 13329038 GACACCATCGACAAC--GTTAAGGCAAAGATCCAAGACAAGGAAGGAATTCCTCCGGATC 13329095 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| | || || || ||||||||||| ||||| || | || | || ||||||||| Sbjct 13329096 AGCAAAGATTGATCTTCGCCGGAAAACAGTTGGAAGATGGCCGTACTTTAGCCGATTACA 13329155 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 ||||||| || || || | |||||||| Sbjct 13329156 ACATCCAGAAGGAATCTACCCTTCATTTGGT 13329186 Score = 86.0 bits (94), Expect = 4e-12 Identities = 160/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || |||||||| || | || || || |||||| | || || || ||| | Sbjct 13329890 ATGCAGATCTTTGTGAAGACATTGACAGGTAAGACTATTACCTTGGAGGTTGAGAGCTCA 13329949 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| | ||| ||||| || || ||||| ||||| | || ||| | Sbjct 13329950 GACACGATTGATAAT--GTCAAGGCTAAGATTCAGGACAAGGAAGGGATCCCACCGGACC 13330007 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| | | || || ||||||||||| | || || | || | |||| | ||||||| Sbjct 13330008 AGCAGAGACTGATATTCGCCGGAAAACAGCTTGAGGATGGTCGGACCTTGGCGGATTACA 13330067 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGCGAC 28020 | ||||| |||||| ||| | |||||||| |||||| | ||||| || ||| Sbjct 13330068 ATATCCAGAAAGAGTCGACTCTTCATTTGGTGTTGCGTCTTCGTGGTGGAGAC 13330120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355861706068320