Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq139 120 3e-22 seq64 95.1 1e-14 seq101 87.8 2e-12 seq126 86.0 5e-12 seq75 82.4 7e-11 >seq139 Length=20634497 Score = 120 bits (132), Expect = 3e-22 Identities = 158/218 (72%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || ||||||||||| || ||| |||||| || ||||| ||||||||||| || || | Sbjct 11242680 CGCAACACCAAATGGAGAGTGGACTCTTTCTGGATATTGTAATCGGCAAGCGTGCGACCA 11242621 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || |||||||| || || || |||||||| | |||||||| | || | | ||||||| Sbjct 11242620 TCTTCAAGCTGCTTACCAGCGAATATAAGTCTTTGCTGGTCTGGAGGGATTCCCTCTTTG 11242561 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGTG 39246 ||| ||| || ||| | | | | || || ||| ||| || |||| ||| Sbjct 11242560 TCCTGGATCTTGGCTTTCACATTATCGATGGTGTCTGAGCT---CTCAACCTCCAAGGTG 11242504 Query 39247 ATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| |||| || ||||| || || |||||||||||||| Sbjct 11242503 ATAGTTTTACCAGTCAGAGTCTTCACAAAGATTTGCAT 11242466 >seq64 Length=9524166 Score = 95.1 bits (104), Expect = 1e-14 Identities = 81/100 (81%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || |||||||||||||| || ||||||||| ||||| ||||| |||||||| | | || Sbjct 3905526 CGCAACACCAAATGTAGAGTTGACTCTTTTTGGATATTGTAATCAGCAAGTGTCCTTCCG 3905467 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT 39169 || |||||||| || || | |||||||| | |||||||| Sbjct 3905466 TCTTCAAGCTGCTTACCATCGAATATAAGTCTCTGCTGGT 3905427 >seq101 Length=14560423 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/219 (70%), Gaps = 8/219 (4%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || ||||||||||| || || |||||| || ||||| ||||| || | || || | Sbjct 13330104 CGCAACACCAAATGAAGAGTCGACTCTTTCTGGATATTGTAATCCGCCAAGGTCCGACCA 13330045 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTT 39188 || ||||||||||| || || ||||| || | |||||||| ||||||| | || || || Sbjct 13330044 TCCTCAAGCTGTTTTCCGGCGAATATCAGTCTCTGCTGGTCCGGTGGGATCCCT-TCCTT 13329986 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGT 39245 |||| || || |||| | | | ||| || ||| ||| || |||| || Sbjct 13329985 GTCCTGAATCTTAGCCTTGACATTATCAATCGTGTCTGAGCT---CTCAACCTCCAAGGT 13329929 Query 39246 GATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| | || || |||| || || |||||||| ||||| Sbjct 13329928 AATAGTCTTACCTGTCAATGTCTTCACAAAGATCTGCAT 13329890 >seq126 Length=8766530 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || |||||||| |||| ||||| || || || || ||||| ||||| ||||| | Sbjct 5178442 CCACCTCTTAAACGTAGAACCAAGTGGAGAGTCGATTCCTTTTGGATATTGTAATCACCC 5178501 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 | ||| ||| | || || | |||||| || |||||||| | | ||| ||||| | || Sbjct 5178502 AATGTACGTCCATCTTCTAACTGTTTCCCTGCAAATATCAATCTCTGTTGGTCTGAAGGA 5178561 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCA-CCGTATCGCTCGACTCCAC 39236 | | ||||| ||| |||||| ||||| ||| | || |||| ||| || || Sbjct 5178562 ATTCCTTCTTTCTCCTGGATTTTAGCTTTGA-CGTTGTCAACCGTGTCGGAGCTTTCAAC 5178620 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 |||| || || | || || || || || || || |||||||||||| Sbjct 5178621 CTCCAATGTTATGGTCTTGCCTGTAAGAGTCTTCACGAAGATTTGCATC 5178669 >seq75 Length=6520592 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/212 (69%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || ||||| ||| || || || || || ||||| || || ||| |||| || ||||| Sbjct 2456189 TGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGTCCGTCTTCGAGCTGC 2456248 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 || || || || || | |||||||||| ||||||| | | || ||||| ||| || Sbjct 2456249 TTTCCGGCGAAAATCAATCGCTGCTGGTCCGGTGGG-ATTCCTTCCTTGTCTTGGATCTT 2456307 Query 39201 CTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 | |||| | | | || ||| ||||| || || | ||||| | || ||||| Sbjct 2456308 CGCCTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATTGTCTTACCCGT 2456367 Query 39261 CAGCGTTTTAACAAAGATTTGCATCTTTACGC 39292 || ||||| || ||||| ||||||||| ||| Sbjct 2456368 TAGGGTTTTCACGAAGATCTGCATCTTTTCGC 2456399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429544762386080