Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq77 95.1 2e-14 >seq77 Length=18658056 Score = 95.1 bits (104), Expect = 2e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 ||||||| ||| || | || ||||| ||||| || |||||| ||| ||| | || || | Sbjct 17990896 GTTCCTGAATTGAAGAGAGTAGGAGACGCATGAGTGAACCATCTTTGAGACATTAAATGG 17990837 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 ||||||| || || || || | || || ||||| || || | || | ||| | | Sbjct 17990836 TATGTTTTGATTGCGGAATCAACATCTTCTTTGTGAATACCAACAGAGACTCTCATTAGC 17990777 Query 78519 ATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 78578 || || ||||| |||||||| || | | |||||| | |||||||||||| | Sbjct 17990776 ATGTGTTGAGGCCTTTCAACAACTTTGCCTTGAACTTTCAAGAGGTATGATTTTTCAAGT 17990717 Query 78579 GTTTTAAAACCAAAATA 78595 ||||| |||||||| || Sbjct 17990716 GTTTTGAAACCAAAGTA 17990700 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 77142 AATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAA 77201 || |||||||| | || || || ||||| ||||| | | ||||||||||||| | | Sbjct 17992884 AAGACTCTACGGCTATATATGTTTGAAGTATACGGTTCAAAACATTCATTGTTTCCAAGA 17992825 Query 77202 ATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA-TTTCTGAGACCATG 77260 || ||| || |||||||||||||| || || | | | || | | ||||||| || | Sbjct 17992824 ATCTGACTCGTTGAAGCAGTTGGCATTGGAGCGA-CGAGAAGCGAGTTTCTGATTCCGTT 17992766 Query 77261 TGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCA 77320 || ||| | ||| ||||| | |||||||||| ||| ||||| |||| ||| Sbjct 17992765 CTTTGAGATCATTTCTCTTAGAGAAGACCAATCCCAACGATTCGAAGGAGTTACATTCCA 17992706 Query 77321 AAGATCGTATTGTAGAATTCCGTTACT 77347 | ||| ||| || ||||| ||||| Sbjct 17992705 CATATCAGGTTGAAGTATTCCTTTACT 17992679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694667410662400