Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq77 149 9e-31 >seq77 Length=18658056 Score = 149 bits (164), Expect = 9e-31 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| ||||| | ||| | ||||| | |||| ||||||||| ||| |||| ||| || Sbjct 17991221 CCTCCTTGATCAACATAACGAGCAGTATCATTAAAAACTCTCAGCATCGGAACAATTCCA 17991162 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 |||||||||||||| || ||| ||| |||||||| ||||||||| ||| || ||| Sbjct 17991161 TTAGATGTACCATTCGTGCCACGAATGTAACTTCCCATTGCACGAATGTTATGAACCGAT 17991102 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | ||| ||||| || || |||| || | |||||| |||||| || ||||| || Sbjct 17991101 ACGCCAATTCCACCAGCTGATTTACTTATAACAGCACACTCTTTCAACGTCTCATAAATC 17991042 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 || || ||||||||||| |||| || | |||||||||| Sbjct 17991041 CCTTCAATACTATCATCTTTCATACAAATCAAAAAACAGCTA 17991000 Score = 107 bits (118), Expect = 3e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 ||||||| ||| || | |||||||| ||||||||||||||| ||| ||| | || || | Sbjct 17990896 GTTCCTGAATTGAAGAGAGTAGGAGACGCATGAGTGAACCATCTTTGAGACATTAAATGG 17990837 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 ||||||| || | | || | ||| || ||||| || |||| ||| | ||| | | Sbjct 17990836 TATGTTTTGATTGCGGAATCAACATCTTCTTTGTGAATACCAACAGAGACTCTCATTAGC 17990777 Query 77114 ATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 77173 || || ||||| | ||| ||| || | | |||||| | |||||||||||| | Sbjct 17990776 ATGTGTTGAGGCCTTTCAACAACTTTGCCTTGAACTTTCAAGAGGTATGATTTTTCAAGT 17990717 Query 77174 GTTTTAAAACCAAAATA 77190 ||||| |||||||| || Sbjct 17990716 GTTTTGAAACCAAAGTA 17990700 Score = 84.2 bits (92), Expect = 3e-11 Identities = 199/296 (67%), Gaps = 6/296 (2%) Strand=Plus/Minus Query 75764 GTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATA 75823 ||||| ||||| | | ||||||||||||| | ||| ||| ||||||||||| ||||| Sbjct 17992857 GTATACGGTTCAAAACATTCATTGTTTCCAAGAATCTGACTCGTTGAAGCAGTTGGCATT 17992798 Query 75824 GGTGCCACCAATAAACTA-TTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTT 75882 || || | | | || | | ||||||| || | || ||| | ||| ||||| | Sbjct 17992797 GGAGCGA-CGAGAAGCGAGTTTCTGATTCCGTTCTTTGAGATCATTTCTCTTAGAGAAGA 17992739 Query 75883 CCAATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCT 75942 |||||||||| ||| || || |||| ||| | ||| ||| || ||||| || || Sbjct 17992738 CCAATCCCAACGATTCGAAGGAGTTACATTCCACATATCAGGTTGAAGTATTCCTTTACT 17992679 Query 75943 AGCATATGA--TCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTC 76000 || || ||| | || || ||||| || || |||||| | || | || || Sbjct 17992678 --CACTGGACTTCCTTGGTAAGTCTCGTATGTACCTTCCTTTACTGCAATCTCTGAAGAT 17992621 Query 76001 GCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGC 76056 | || | || ||| ||||| |||||||| || | ||| || || | ||| || Sbjct 17992620 GACTTAAGTGCGTGGTAGTAAATGGTTTCGAATATGTCCTTGTTCAGTTGTTGAGC 17992565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712932974131200