Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euclidium_20syriacum_20[genbank_20GCA_5F900116095.1_202016-12-31] 160 sequences; 229,211,023 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq75 132 4e-26 seq72 120 3e-22 seq101 105 6e-18 seq139 95.1 1e-14 seq80 86.0 6e-12 >seq75 Length=6520592 Score = 132 bits (146), Expect = 4e-26 Identities = 172/236 (73%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || ||||| ||||||||| ||||| ||||||| | Sbjct 2456165 CCACCACGGAGACGAAGGACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 2456224 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| ||||||||||| |||||||| |||| ||||| ||||||| || Sbjct 2456225 AGAGTGCGTCCGTCTTCGAGCTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCCGGTGGG 2456284 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813 | | |||||||| ||| || ||| || | || | |||||| ||||| | Sbjct 2456285 ATTCCTTCCTTGTCTTGGATCTTCGCCTTGACATTGTCG--ATGGTGTCGGAGGACTCGA 2456342 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTTATCG 41869 |||| | || || || |||||||| || || || ||||| |||||||| || ||| Sbjct 2456343 CCTCGAGGGTGATTGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATCTTTTCG 2456398 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || | |||||| | |||| || || || ||||||||| ||||| ||||| | Sbjct 968155 CCACCTCTTAGACGGAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCT 968096 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || | || ||||||||||| || ||||| |||| | ||| ||||||| || Sbjct 968095 AAAGTTCGGCCATCTTCGAGCTGCTTTCCTGCGAAGATCAATCTCTGCTGGTCCGGAGGG 968036 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811 | | ||||||| | ||| | || |||| ||| | | ||||| ||| || Sbjct 968035 ATACCTTCCTTGT-CTTGAATCTTGGCTTTTACGTTATCGATGGTGTCTGAGCT---TTC 967980 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||||| || || || || || |||| |||||| || || |||||||| Sbjct 967979 AACCTCCAGGGTGATTGTCTTGCCGGTCAACGTCTTGACAAAGATCTGCAT 967929 >seq72 Length=2807273 Score = 120 bits (132), Expect = 3e-22 Identities = 168/232 (72%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || |||||||| ||||||| || || || ||||||||||||||||||||| | Sbjct 226586 CCACCACGTAGACGCAACACCAAGTGAAGGGTCGACTCCTTCTGAATGTTATAGTCAGCC 226645 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | |||||| | || ||||| ||||| || || || || || ||||| || |||| || Sbjct 226646 AAGGTGCGACCATCCTCGAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGATCCGGAGGG 226705 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811 | | ||||| ||| ||| | || || | ||| | | | ||||| ||| ||| Sbjct 226706 ATACCTTCCTTATCC-TGAATCTTGGCCTTCACGTTGTCGATTGTGTCTGAGCT---CTC 226761 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||||||| || || || || || || || ||||| ||||||||||||||| Sbjct 226762 CACCTCCAGAGTAATGGTCTTGCCGGTAAGTGTCTTGACGAAAATCTGCATG 226813 Score = 113 bits (124), Expect = 4e-20 Identities = 166/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| ||| || || ||||||||| ||||| ||||||| Sbjct 226358 CCACCACGGAGACGGAGGACCAAATGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCT 226417 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | |||||| | || ||||| ||||| || ||||| || || ||||| ||||||| || Sbjct 226418 AAGGTGCGACCATCCTCGAGTTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCCGGTGGG 226477 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGA---CTC 41811 | | || |||||| ||| || ||||| || | || | |||| ||| ||| Sbjct 226478 ATACCTTCTTTGTCCTGGATCTTGGCCTTCA-CGTTGTCAATGGTGTC---CGAGCTCTC 226533 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| |||| || ||||| || || |||| ||||| |||||||||||||| Sbjct 226534 CACTTCCAAAGTGATCGTCTTCCCTGTCAAAGTCTTAACGAAAATCTGCAT 226584 Score = 104 bits (114), Expect = 2e-17 Identities = 153/213 (72%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||||||| || || ||||||||| ||||| ||||| | | ||| || | || ||| Sbjct 227060 ACCAGATGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCCAAGGTTCGGCCATCCTCG 227119 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 || |||||||||||||| |||| | ||| ||||||| || | | |||||||||| || Sbjct 227120 AGTTGCTTGCCGGCGAAGATCAATCTCTGCTGGTCCGGTGGGATACCCTCCTTGTCC-TG 227178 Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTCCACCTCCACCGTTATCGT 41829 | || |||| ||| | | | ||||| ||| ||| ||||| | || || || Sbjct 227179 GATCTTAGCTTTGACGTTGTCGATTGTGTCAGAGCT---CTCAACCTCTAGGGTGATGGT 227235 Query 41830 TTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || |||| |||||| ||||| || ||||| Sbjct 227236 CTTGCCGGTCAACGTCTTCACGAAGATTTGCAT 227268 Score = 93.3 bits (102), Expect = 4e-14 Identities = 162/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| || |||| || || || ||||||||||||||| || || | Sbjct 226813 GCCTCCACGAAGACGCAAGACCAAGTGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGC 226872 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | ||| || |||| || | ||||| |||||||| |||| | || ||||||| || Sbjct 226873 CAAGGTACGGCCGTCTTCCAATTGCTTTCCGGCGAAGATCAATCTTTGCTGGTCCGGTGG 226932 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACT 41810 | | ||||||| | || |||| |||| || | | | ||||| ||| || Sbjct 226933 GATACCTTCCTTGT-CTTGGATTTTAGCTTTGACATTGTCGATCGTGTCTGAGCT---CT 226988 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || |||| || || ||||| || |||| |||||| ||||| |||||||| Sbjct 226989 CAACTTCCAAGGTGATGGTTTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 227040 >seq101 Length=14560423 Score = 105 bits (116), Expect = 6e-18 Identities = 165/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| ||||||| || || || |||||||||||||| ||||||| Sbjct 1861255 CCACCACGGAGACGCAACACCAAGTGAAGGGTTGATTCCTTCTGAATGTTGTAGTCGGCT 1861196 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | |||||| | || || |||||||| |||||||| || || ||||| || |||| || Sbjct 1861195 AAGGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAGATAAGACGCTGCTGATCCGGAGGG 1861136 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811 | | ||||| ||| ||| || |||| ||| | | | ||||| ||| ||| Sbjct 1861135 ATACCTTCCTTATCCTGGATCTTGGCCTTC-ACGTTGTCGATTGTGTCTGAGCT---CTC 1861080 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||||| | || || || || || || || ||||| ||||| || |||||| Sbjct 1861079 CACCTCAAGAGTAATTGTCTTGCCGGTAAGGGTCTTCACGAAGATTTGCATG 1861028 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || || ||||||||| ||||| ||||| | Sbjct 1861483 CCACCACGGAGACGGAGGACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGCC 1861424 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || ||||||||||| || ||||| || || ||||| ||||||| || Sbjct 1861423 AGTGTGCGACCATCCTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGTGGG 1861364 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||||| | ||| |||| || | || | | | || ||| |||||| Sbjct 1861363 ATACCTTCCTTGT-CTTGAATTTTGGCCTTCACATTGTCAATGGTATCGGAGCTCTCCAC 1861305 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || || || |||| ||||| |||||||| ||||| Sbjct 1861304 TTCCAGAGTGATGGTCTTCCCGGTCAAAGTCTTCACGAAAATTTGCAT 1861257 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| ||||| ||||||| || ||||||||| || || || || | Sbjct 13329888 CCACCACGAAGACGCAACACAAGATGCAATGTAGACTCCTTCTGGATATTGTAATCCGCC 13329829 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || | || || ||||| || |||||||| || || | ||| ||||||| || Sbjct 13329828 AAAGTCCGACCATCCTCAAGCTGTTTTCCGGCGAAGATAAGTCTCTGCTGGTCCGGTGGG 13329769 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811 | | |||||||||| ||| | || || | || | | | ||||| |||| || Sbjct 13329768 ATCCCCTCCTTGTCC-TGAATCTTAGCCTTGACATTGTCTATTGTGTCTGAGCTC---TC 13329713 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||||| || || || || || || || ||||| |||||||||||||| Sbjct 13329712 AACCTCCAAAGTGATGGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 13329662 Score = 95.1 bits (104), Expect = 1e-14 Identities = 164/232 (71%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| ||||||| ||| || || ||| ||||| || || || || | Sbjct 13330116 CCACCACGAAGACGCAACACCAAATGAAGAGTCGACTCTTTCTGGATATTGTAATCCGCC 13330057 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCC-GCGGG 41754 | ||| || | || || ||||| || |||||||||||||| | ||| |||||| | ||| Sbjct 13330056 AAGGTCCGACCATCCTCAAGCTGTTTTCCGGCGAATATCAGTCTCTGCTGGTCCGGTGGG 13329997 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACT 41810 | | || ||||||||| ||| | || || | || | | ||||| ||| || Sbjct 13329996 ATCCCT-TCCTTGTCC-TGAATCTTAGCCTTGACATTATCAATCGTGTCTGAGCT---CT 13329942 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | ||||||| || || || ||||| |||| ||||| || || |||||||| Sbjct 13329941 CAACCTCCAAGGTAATAGTCTTACCTGTCAATGTCTTCACAAAGATCTGCAT 13329890 Score = 86.0 bits (94), Expect = 6e-12 Identities = 162/232 (70%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || ||| ||| || || ||||| || || | Sbjct 13329660 CCACCACGAAGACGAAGGACAAGGTGAAGTGTGGACTCTTTTTGGATGTTGTAATCCGCC 13329601 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||| || | || |||||||| || ||||||||||| || | ||| ||||||| || Sbjct 13329600 AAGGTCCGACCATCCTCGAGCTGTTTTCCGGCGAATATGAGTCTCTGCTGGTCCGGAGGG 13329541 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCA-ACGACGACACAGTGTC---GCTCGACT 41810 | | ||||||| | ||| | || | ||||| | | | | ||||| ||| || Sbjct 13329540 ATTCCTTCCTTGT-CTTGAATCTTCGCCTTCACATTATCA-ATGGTGTCTGAGCT---CT 13329486 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||||||| ||||| ||||| || || || ||||| || || || ||||| Sbjct 13329485 CCACCTCCAAGGTTATTGTTTTTCCGGTGAGTGTCTTGACAAAGATTTGCAT 13329434 >seq139 Length=20634497 Score = 95.1 bits (104), Expect = 1e-14 Identities = 164/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || ||||| || || ||| ||||||||||| || || | Sbjct 14477802 CCACCACGGAGACGGAGAACAAGATGAAGAGTTGACTCTTTCTGAATGTTGTAATCCGCC 14477861 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCC-GCGGG 41754 | | ||| | || |||||||| || ||||| || || || | |||||||||| | ||| Sbjct 14477862 AAAGCGCGACCATCCTCGAGCTGTTTTCCGGCAAAGATTAGTCTCTGTTGGTCCGGAGGG 14477921 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGA---CTC 41811 | | || || |||||| ||| | || || | || | || | || | ||| ||| Sbjct 14477922 ATCCCT-TCTTTGTCC-TGAATCTTCGCCTTTACATTGTCA-ATCGTATC-CGAGCTCTC 14477977 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| | ||||| || |||||||||| |||||| || || |||||||| Sbjct 14477978 CACCTCAAGTGTTATGGTCTTACCCGTCAACGTCTTGACAAATATCTGCAT 14478028 >seq80 Length=21647715 Score = 86.0 bits (94), Expect = 6e-12 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| ||| || || || ||||| ||||| ||||| | | Sbjct 2367016 CCACCACGAAGACGAAGAACCAAATGAAGAGTTGATTCTTTCTGGATGTTGTAGTCAGCG 2366957 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCG-CGGG 41754 || || | | || ||||| ||||| || || || || || | ||| ||||| | |||| Sbjct 2366956 AGAGTTCTTCCATCCTCGAGTTGCTTCCCAGCAAAGATAAGCCTCTGCTGGTCTGGCGGG 2366897 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGA---CTC 41811 | | || |||||||| ||| ||| ||| | || || | ||| | ||| ||| Sbjct 2366896 ATCCCT-TCCTTGTCTTGGATCTTTGCCTTTA-CGTTATCA-ATTGTGTC-CGAGCTCTC 2366841 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| |||| || || ||||| || || || ||||| |||||||||||||| Sbjct 2366840 CACTTCCAAAGTGATAGTTTTTCCAGTGAGTGTCTTCACGAAAATCTGCAT 2366790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303075392000