Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05]
638 sequences; 243,110,105 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq365 109 1e-18
seq426 98.7 2e-15
seq300 98.7 2e-15
seq154 98.7 2e-15
seq81 98.7 2e-15
seq72 98.7 2e-15
seq25 98.7 2e-15
seq1 98.7 2e-15
seq33 84.2 5e-11
>seq365
Length=14695327
Score = 109 bits (120), Expect = 1e-18
Identities = 149/202 (74%), Gaps = 7/202 (3%)
Strand=Plus/Plus
Query 229750 TTCTCTGCGTTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCA 229809
|||| | ||| || || ||||| || | || ||||| |||||||||||||| | ||||
Sbjct 6185592 TTCTGTATGTTTCCGATTCAATACCCACAGATCTGGGAGATGTACAAGAAGGCCGAGGCA 6185651
Query 229810 ACTTTCTGGACCACTGAGGAAGTTCCTCTGAACGCA-GACG-TCGTCGACTGGCGTGAGA 229867
| |||||||| | || ||||| ||| | | || |||| ||| ||||||| ||||
Sbjct 6185652 TCGTTCTGGACGGCGGAAGAAGTCGATCT-ATCACAAGACGGTCG-CGACTGG---GAGA 6185706
Query 229868 AACTCAATGACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCG 229927
| ||||| |||| ||| || || |||||||||||| |||| | || ||||| | ||| |
Sbjct 6185707 ATCTCAACGACGGCGAGCGACACTTCATCAAACACGTCCTCGCCTTCTTCGCCGCCTCAG 6185766
Query 229928 ATGGTATTGTGATGGAAAATCT 229949
| || || || | || |||||
Sbjct 6185767 ACGGAATCGTCCTAGAGAATCT 6185788
Score = 100 bits (110), Expect = 6e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768
||||||||||||||||| |||||||||| || || |||| || |||||||||||||||||
Sbjct 5258881 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 5258822
Query 165769 CCCCACGATGGGC 165781
||||||| |||||
Sbjct 5258821 CCCCACGGTGGGC 5258809
>seq426
Length=14042796
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 6489047 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 6488988
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 6488987 CCCACGGTGGGC 6488976
>seq300
Length=15655920
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 8524535 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 8524476
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 8524475 CCCACGGTGGGC 8524464
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 15011820 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 15011761
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 15011760 CCCACGGTGGGC 15011749
>seq154
Length=17905225
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 3360133 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 3360074
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 3360073 CCCACGGTGGGC 3360062
Score = 95.1 bits (104), Expect = 3e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| | || |||| || ||||||||||||||||||
Sbjct 52595 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAAGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 52654
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 52655 CCCACGGTGGGC 52666
>seq81
Length=19988679
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 4598279 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 4598338
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 4598339 CCCACGGTGGGC 4598350
Score = 95.1 bits (104), Expect = 3e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || |||||||||||||||||
Sbjct 524729 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGT 524670
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 524669 CCCACGGTGGGC 524658
>seq72
Length=2765197
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 929823 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 929882
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 929883 CCCACGGTGGGC 929894
>seq25
Length=9441222
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 3724027 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 3723968
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 3723967 CCCACGGTGGGC 3723956
>seq1
Length=21755756
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 6211153 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 6211212
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 6211213 CCCACGGTGGGC 6211224
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 7414870 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 7414811
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 7414810 CCCACGGTGGGC 7414799
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 7446309 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 7446368
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 7446369 CCCACGGTGGGC 7446380
>seq33
Length=9343251
Score = 84.2 bits (92), Expect = 5e-11
Identities = 58/65 (89%), Gaps = 2/65 (3%)
Strand=Plus/Plus
Query 165258 CCATAGCTCAGTTGGTTAGAGCGTTCGACTGTTAATCGAGAGGTCACCGGTTCGAACCCG 165317
|||||||||||| | |||||| |||||||| ||||||||||||||||||||||||||
Sbjct 2766578 CCATAGCTCAGTGG--TAGAGCATTCGACTGCAGATCGAGAGGTCACCGGTTCGAACCCG 2766635
Query 165318 GTTGG 165322
|||||
Sbjct 2766636 GTTGG 2766640
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057815352949940
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |