Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq365 141 1e-28 >seq365 Length=14695327 Score = 141 bits (156), Expect = 1e-28 Identities = 572/877 (65%), Gaps = 27/877 (3%) Strand=Plus/Minus Query 16674 TTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCT 16733 |||||||||| | ||| | || ||||||||||| ||||| |||| || || || || Sbjct 6186462 TTTGGTAATCACCAACTCTCTTCTCGAAAAAGTTTGTTTTACCCTGAAGCGAGATTAACT 6186403 Query 16734 CCATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTA 16793 |||| ||||||| ||||||| | | | ||| |||||| || | | | | Sbjct 6186402 CCATCCAATCAAACGGATTAGCCACACCGTAGACCTTACCGTACCCAAGCGCACCCAAAA 6186343 Query 16794 ATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGAC 16853 |||||||| ||||| || ||||| || | ||| || || | |||||| || | | || Sbjct 6186342 GCCTATCCGCAACAAACTCGATATACTGACTCATCAAGTCACGGTTCATCCCCACCA-AC 6186284 Query 16854 GTACC-GGAAGAGCTTCCGTCAAAAA-TCGTTGCTCTATAACAACCGCTTCCTTAATAAT 16911 | | ||||| || || || ||| || | ||| || | || || || | || Sbjct 6186283 GCGCAAGGAAGCGCGTCGCACACAAACTCCCT-CTCGATCTCGACGGCGTCGCAGACGAT 6186225 Query 16912 --ACTAGCAACTCGTTCCTCGGACGGTGTA-TGTTTAAGATGTTTAAACATCAGACATGC 16968 ||| || || ||||| | | | | | || | | | | || || || || Sbjct 6186224 CGACTTC--ACGCGCTCCTCCGTGAGCTTCGTCCTCAACA-GAGTGTAGATGAGGCACGC 6186168 Query 16969 GAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGG 17028 ||||||||| ||||| || ||||||| ||| | ||||| || || || || || || Sbjct 6186167 GAAATCGCAGTGTAAGCCTTCGTCTCGAGAGATCAACTCGTTGGAGAAGGTTAATCCAGG 6186108 Query 17029 CATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACC 17088 ||| || |||||||| | ||| || |||| | ||| || || ||||| ||||| Sbjct 6186107 CATGAGACCACGTTTCTTAAGCCAGAAAATCGAGCAGAAGCTACCGGAGAAGAAGATACC 6186048 Query 17089 CTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCA 17148 |||||| | || || |||| | ||| || ||| | ||| | || || ||||| Sbjct 6186047 TTCGACGCAGGCGAAAGCGACGATTCGCTCTGCGAAAGTCTGAGATCCGT--CG-ATCCA 6185991 Query 17149 TTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGC-CTTAA--- 17204 || | |||||| ||||| | | | |||| || ||||| || || | || Sbjct 6185990 CGTCATCGCCCACTGAGCTTTCTTCGCGACGCAAGGGATGGTTTCGATTGCGCGGAAGAG 6185931 Query 17205 ATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTT 17264 || | ||||| || ||| ||| | || ||||| |||| ||| || |||||||| | Sbjct 6185930 ATGGTCTCTCTCTT---TGT-TGTCCTTGATGTACGTGTCGAGGAGGAGACTGTACATCT 6185875 Query 17265 CGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTA-AAAGCATCGGGCTTCCGCTATT 17323 | ||||| || ||||| || || ||||| || ||||| |||||| || || |||| | | Sbjct 6185874 CCGAGTGGATATTCTCAATCGCGATCTGGAAACCGTAGAAAGCA-CGCGCCTCCGAGACT 6185816 Query 17324 TGAACTTC-CACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGC 17382 || || || || | |||||| || ||||| || ||||| ||||| ||||| Sbjct 6185815 TGGACATCGGACAT-GAATCGGGAAGCGAGATTCTCTAGGACGATTCCGTCTGAGGCGGC 6185757 Query 17383 GAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTG-TAAGAACGCGCCAGT 17441 ||| || || | | || || ||||| | | ||| ||| | | ||| ||||| Sbjct 6185756 GAAGAAGGCGAGGACGTGTTTGATGAAGTGTCGCTCG-CCGTCGTTGAGATTCTCCCAGT 6185698 Query 17442 CCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTT 17501 | |||| |||| ||| |||||||| | ||||| || ||| | ||||| | Sbjct 6185697 CGCGACCGTCTTGTGATAGATCGACTTCTTCCGCCGTCCAGAACGATGCCTCGGCCTTCT 6185638 Query 17502 TATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 | ||||| | ||| || | |||||| || || || Sbjct 6185637 TGTACATCTCCCAGATCTGTGGGTATTGAATCGGAAA 6185601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517541472573840