Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eutrema_20salsugineum_20[refseq_20GCF_5F000478725.1_202013-11-05] 638 sequences; 243,110,105 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq9 118 8e-22 >seq9 Length=11574597 Score = 118 bits (130), Expect = 8e-22 Identities = 119/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 101708 TGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATC 101767 |||||||| || ||| ||||||||| || ||||| || |||| | || ||||| | | Sbjct 3600001 TGAGCATCCCCAATAACATGGATAAAATCACCAGGAACAAGATCACACACGTGAGCTAGC 3599942 Query 101768 ATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCT 101827 |||||||| | |||||| ||| |||||||||||| ||||| || | ||||| || || Sbjct 3599941 ATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCAAGGCCCATGTCCGCA 3599882 Query 101828 GATCTTTGATACAGTTGACAGGAAAGCTTTCCATC 101862 || | ||||||| |||||| || |||| ||| || Sbjct 3599881 GAACGCTGATACATTTGACATGAGAGCTCTCCTTC 3599847 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 101708 TGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATC 101767 |||| || || ||| ||||||||| || ||||| || |||| || ||||| | | Sbjct 3606706 TGAGTGTCCCCAATAACATGGATAAAATCACCAGGAACAAGATCGCACACGTGAGCGAGC 3606647 Query 101768 ATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCT 101827 ||| |||| | |||||| ||| |||||||||||||||||| || | ||||| || || Sbjct 3606646 ATGAAAGTAAGAAGAGAGTAGGAAGCAATGTTAAATGGCACACCAAGGCCCATGTCTGCA 3606587 Query 101828 GATCTTTGATACAGTTGACAGGAAAGCTTTCCATC 101862 || | ||||||| |||||| || |||| ||| || Sbjct 3606586 GAACGCTGATACATTTGACATGAGAGCTCTCCTTC 3606552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361248391046138